Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02044 ATGTCCATCTTGCCCTCACAAACCCAAGCTACATCTACATCTTCTTCGTCTACACCAATCCCTAACCCTAATTTACAACATGGAATTTCAGATACTACCTCTTCTCTTTCCCCGAAACTCCACCACGCTCTCGGATCTCTCCAGATCTCCGATTATCCAGGTTCATCAACTCCAGCTGCAGAAGATTCTGGCGGACCTTCCGAAAAGGTGACGGAATTAGAGTCTTCAAGTGGTATGAAGGCACCTCAGCGAAACTCTAGAACACATTCTAGGAGTCACTCTGGAAGACGGACAGTTGGATCGCCCCAGTCTGAGGGGAAGACAACAGGAACAGTTTCTTCTCATAGAAATCAACAGACTACCGGGTCTGTATATTCTCAAGGAAGCACCCCTTTGGCAGGGAGGAAATCTCAGATGGTGAATGGCAATCACTTGCTCAATTTTCAGTATGATCCAATATCACGTTCTCAACAAAGGGGTACTCCCCCTCCCCCTCCAGCAAGAAGGCAGAGGAAGAGAAGACCGTACAATAAAGATCTGTTTTTGCAGGCAAATTTCAAATTCATGGTACTGGATTCAGGAAACTATTCACCCGAGTCAATGGATCCAGATAAAATGTTGCAGTGGGAAGATATTATATGTGTGACATATTCGACTCCCTTTCCAGTTCAGTGTCCAATTTGTTTGGAGCATCCCCTGTGTCCCCAAATAACCTCATGTGGGCACATTTTCTGTTTCCCTTGTATACTACAATACTTGATGTTGGGTGAAGAGGATCACAAAGGTGATTGCTGGAAAAGGTGTCCATTGTGCTTTGTGACGATATCTGTCAAGGATTTATATACACTCCACATCACAAATGTCAAACAGTATCAAGTAGGAGATAATATTGAGTTCAGTTTCTTAACAAGGAAGAAGGATTCATTTACTCTTTCGTATAAAAATAAACAAGAAACTGATAACTCGTCATGTAGCCAACTAAATGTATATGACCCCTTTTCTAAGTTCACACTCACTTCAGATGTAGATCTCTCAGTGAGGCATGCAATATCAGATCTAGATGGTTGGCTGGCCAGAGCTGATTCAGGTCTTGTTGACGACCTGGAGAAGCTTCCATATGTTAGTGATGCAATGCAACAATTAAAACAGAGAAAGAAGTATTGGAATGAGCACAAGGCTTGTGACAGTGAAAAATCTTCTAACTTCGTTGATTATGCACACCAGATACCATCAATATCTGCAAATGCTGTGGATACTGATGACGAAAGCTGTTCTAATGGATCAAGAACTTCCTCTACTGATTTCCCTGATCAAAGTAAGGTTGTAATGTTGGATAAGTCAACTGCTGGAGCCTCTCAGGATGAAACTTTGGATGTGGACAAGGTACTAGTAGAGCAGGAAATGAATCTGTCTTCTTCGTATGAGGAGAAAAATTGTATTCAAGGGCATTCAAATGGCACTGGAGATGCAAAGGAGAATGATTCATACAATTTCTATCAGGCTGCTGATGGTCAACATATAATTCTTCATCCTTTGAACACGAAGTGTTTACTGCACCATTATGGTAGCTATGATAAGCTTCCTCACAGAATAAGTGGAAGGATTTTACAATTGGAGACAGTAACTCAATCTGAGGCTATGAGGAGGCGGTATCGATTTTTAAGTCATTTTCCGCTAACCACAATATTTCAGCTTTGTGAAGTTGATTTGAGCGAGATGTTACCTCCTGAAGCACTAGCCCCATTTATGGATGAAATAAAGAATCGCGCAAACCAGAGGAAGCAACTTGCAAAGAAGGAACAAAAGGAAAAATTAAAGGCTGAAGCTGCTTCTAATTATGCTCTTTCCATGTCAACCCATTATCAGTTTATTTCTCGTGATGATCCTCCCACGTTCTCCATGGATGACTTTGAAGCTCTGGGAAATTCAGCTTTGTCATCAAGTCCTCCAGTTGTTGGTGAGAAGAAATTGTTCTCAAGTGTTACTAGGCTTGGTTTTGCTGCTGGTCATGATTCTCCATCCTTTCAAACTCAAGAAACTAGCAATCTACATAATCGCAATTCAATTGCTGATTCTTCTGGTACAGCAGGTTTGAGGAATGGGGAGACACGATCGTACTCCAATATCATATCTAGAGCAGAATTGAATGGAAGTTCGAATGCACCGAAGACAAATGACTTGGGAAAGAAGGGAAAGAAACCAAGTCGAGTTCTTCTGTCAACAGCTGGTGGCAGGCGTTATTGA 2244 0.4176 MSILPSQTQATSTSSSSTPIPNPNLQHGISDTTSSLSPKLHHALGSLQISDYPGSSTPAAEDSGGPSEKVTELESSSGMKAPQRNSRTHSRSHSGRRTVGSPQSEGKTTGTVSSHRNQQTTGSVYSQGSTPLAGRKSQMVNGNHLLNFQYDPISRSQQRGTPPPPPARRQRKRRPYNKDLFLQANFKFMVLDSGNYSPESMDPDKMLQWEDIICVTYSTPFPVQCPICLEHPLCPQITSCGHIFCFPCILQYLMLGEEDHKGDCWKRCPLCFVTISVKDLYTLHITNVKQYQVGDNIEFSFLTRKKDSFTLSYKNKQETDNSSCSQLNVYDPFSKFTLTSDVDLSVRHAISDLDGWLARADSGLVDDLEKLPYVSDAMQQLKQRKKYWNEHKACDSEKSSNFVDYAHQIPSISANAVDTDDESCSNGSRTSSTDFPDQSKVVMLDKSTAGASQDETLDVDKVLVEQEMNLSSSYEEKNCIQGHSNGTGDAKENDSYNFYQAADGQHIILHPLNTKCLLHHYGSYDKLPHRISGRILQLETVTQSEAMRRRYRFLSHFPLTTIFQLCEVDLSEMLPPEALAPFMDEIKNRANQRKQLAKKEQKEKLKAEAASNYALSMSTHYQFISRDDPPTFSMDDFEALGNSALSSSPPVVGEKKLFSSVTRLGFAAGHDSPSFQTQETSNLHNRNSIADSSGTAGLRNGETRSYSNIISRAELNGSSNAPKTNDLGKKGKKPSRVLLSTAGGRRY 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02044 747 ProSiteProfiles Zinc finger RING-type profile. 225 271 IPR001841 -
Trre13g02044 747 MobiDBLite consensus disorder prediction 69 85 - -
Trre13g02044 747 SUPERFAMILY RING/U-box 224 278 - -
Trre13g02044 747 SMART ring_2 225 271 IPR001841 -
Trre13g02044 747 PANTHER RING FINGER 10 FAMILY MEMBER 63 747 IPR039739 -
Trre13g02044 747 MobiDBLite consensus disorder prediction 416 438 - -
Trre13g02044 747 MobiDBLite consensus disorder prediction 671 725 - -
Trre13g02044 747 Pfam Zinc finger, C3HC4 type (RING finger) 225 271 IPR018957 GO:0046872
Trre13g02044 747 CDD RING-HC_RNF10 223 280 - -
Trre13g02044 747 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 218 330 IPR013083 -
Trre13g02044 747 MobiDBLite consensus disorder prediction 149 175 - -
Trre13g02044 747 MobiDBLite consensus disorder prediction 1 41 - -
Trre13g02044 747 MobiDBLite consensus disorder prediction 95 136 - -
Trre13g02044 747 MobiDBLite consensus disorder prediction 670 747 - -
Trre13g02044 747 ProSitePatterns Zinc finger RING-type signature. 240 249 IPR017907 -
Trre13g02044 747 Coils Coil 583 603 - -
Trre13g02044 747 MobiDBLite consensus disorder prediction 1 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02044 Trre-Chr13 17705006 17710047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02044 134 681 C3H Transcription Factor Family AT3G26730 57.092 0.0 633
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02044 K26979 - gmx:100798764 1107.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02044 13 17705006 17710047 Trre13g02044 13 17705006 17710047 ECH