Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02034 ATGGTTGCACAGTCGTTGGAGATTCGCGATTCTGTTCCAAACGGAGACTGTGGTGGTGTTGTTCCGATGGTCTCCGCGAAGAATGAGGTGAGTTCGACGGTGAAAATAAAGGTGAAATATAGTGGAAAGAAAACCGATTCGACGGAAACGTTACCAATGCCGAATCGGAGATCGAGCTCGAGAATCCAAGCTCAGCTGAAAGAAGCTGAGGAGAAACAGCGTCGTCGGAAAGCTGAAGGTTTAGCCGAGGAAGAAAAGTCTGTTGAGGTTGTGACTCCGCCGAAGTCTAACAAGCGTGTTAAGAAAACTTCCGGCGAGGTGAGTGTTCAGAAAAGTCCCGGCGAGGTGAGTGTGAGTAAGGAAGGTGTTTCCGAGAACGAGATGAAGAAGAAGGATGATGTTGTTTTGGAGAAAGAGACGAAGACGAAGAAGAAATCGGCATCGTTAGTGAAACGTGAGCTGATGGAAGTTCGGCATCAAAAAATAACGGCCGAGTCGGAAAATGCCGTTGCTGAAAGTGCAGCTGGTGGTGCATTAGGTGAGAAGAGCCTTACTGCTAAGGTGAAGGATACGATTAGGGTGTTTAACAAACACTATCTTCATTTGGTTCAGGAGGAGGAGGAGAGGGTTGCTAAAGCGAAAGCAGAAATTGAGAAGAAAGGTGGTGGGAAGAAATCTGCAAAAAATTCTTCCAAGAAGAAATCTGCTAAAAATTCTCCTGAGAAGAAATCTCCTGAGAAGAAATCAGCTAAGAAAGACAGTCCAGCTAAAGAAAAAAAGCATGCTGCCAAGCGACCTGATCTGAAGGCCTTAACGAAGATGTTGAATAATAATGAGATACTGTATCCTGAGAAGAGAATAGGCAATATTCCAGGTATTGAGGTTGGCTATCAGTTTTATTCTCGTGCTGAAATGGTTGCAGTTGGTTTTCATCACCACTGGTTAAACGGTATTGATTATATGGGCCAAAGTTATACCAAAATGTACAAAGAGTACAATTTCCCAATTGCTGTGGCCATTGTTTTGTCAGGCATGTATGAGGATGATCTGGATAATGCTGAGGATGTTGTGTACACTGGTCAAGGTGGACATAATCTAACTGGTGATAAGCGTCAAATGCGAGATCAAAAATTGGAGCGGGGTAATTTAGCACTCAAGAACTGCCAGGAGCAAAGTGTGCCAGTTAGGGTGATTCGAGGTCACGACTCTACTAGCAGTTACACTAAGAAAGTGTATACATATGATGGCCTGTACAAGGTTGTCAATTATTGGGCAGAGAAGGGAATATCGGGCTTCACTGTCTATAAGTTTCGGCTTAGGAGGGTTGATGGACAGCCTACTTTAACAACCCAACAGGTTTATTTCACATGTGGACGCGTACCTCAGACTGTAGCAGAAATACGAGGGTTGGTATGTGAGGATATCACTGAAGGTCAAGAAGATGTGCCCATTCCAGTTACAAATTTGGTTGATGAGTCTCCTGTTCCGCCCATAGGTTTCAAATATTTAAAGTCTCTGAAGGTTGCAAAAAGTGTTAAGCTTCCTGCGAATGCCTCTGGGTGCAATTGCAAAGGCAGATGTATTGATCCGAGAACTTGTGAATGTGCAAAGCGCAATGGCTCTGAATTCCCCTATGTTTCTAAGGATGGTGGCAGATTAATTGAAGCTAAAGATGTTGTGTTTGAATGTGGTCCCAATTGTGGTTGTGATCCTGGTTGTGTGAACAGAACTTCTCAAAAAGGACTTCGGCATCGTCTGGAGGTTTTCCGTACTGCAAAGAAAGGATGGGCTGTTAGATCTTGGGATTTTATACCATCTGGTGCACCAGTTTGTGAATACACAGGAATACTTGGTAGGGCAGATGATGTGGACAGTGTGTTGGAAAACAACTACATATTTGAGATAGATTGCTTGCAAACAATCAAGGGACTTGGTGGAAGGGAGAGGCGGTCACAAAATGTAGCATATGCTGCAACTCTGTTGGACAAATATGATGGCCAAGATTCTGAAGCACCAGAGTTTTGCATTGACGCGGGATCCACTGGAAATATTGCTAGGTTTATAAACCATTGTTGTGAGCCTAATTTGTTTGTACAATGTGTTTTGAGCACACACCATGATTTGCGATTGGCTCGAGTTGTGCTGTTTGCTGCTGACAACATACCCCCTTTACAGGAGCTGACATATGACTATGGCTATGCGCTTGACAGTGTCTTGGACTCTGTTGGAAAGATAAAGCAAATGGCATGCTATTGTGGAGCTTCTGGCTGCAGGAAGCGAATGTTCTAA 2289 0.4391 MVAQSLEIRDSVPNGDCGGVVPMVSAKNEVSSTVKIKVKYSGKKTDSTETLPMPNRRSSSRIQAQLKEAEEKQRRRKAEGLAEEEKSVEVVTPPKSNKRVKKTSGEVSVQKSPGEVSVSKEGVSENEMKKKDDVVLEKETKTKKKSASLVKRELMEVRHQKITAESENAVAESAAGGALGEKSLTAKVKDTIRVFNKHYLHLVQEEEERVAKAKAEIEKKGGGKKSAKNSSKKKSAKNSPEKKSPEKKSAKKDSPAKEKKHAAKRPDLKALTKMLNNNEILYPEKRIGNIPGIEVGYQFYSRAEMVAVGFHHHWLNGIDYMGQSYTKMYKEYNFPIAVAIVLSGMYEDDLDNAEDVVYTGQGGHNLTGDKRQMRDQKLERGNLALKNCQEQSVPVRVIRGHDSTSSYTKKVYTYDGLYKVVNYWAEKGISGFTVYKFRLRRVDGQPTLTTQQVYFTCGRVPQTVAEIRGLVCEDITEGQEDVPIPVTNLVDESPVPPIGFKYLKSLKVAKSVKLPANASGCNCKGRCIDPRTCECAKRNGSEFPYVSKDGGRLIEAKDVVFECGPNCGCDPGCVNRTSQKGLRHRLEVFRTAKKGWAVRSWDFIPSGAPVCEYTGILGRADDVDSVLENNYIFEIDCLQTIKGLGGRERRSQNVAYAATLLDKYDGQDSEAPEFCIDAGSTGNIARFINHCCEPNLFVQCVLSTHHDLRLARVVLFAADNIPPLQELTYDYGYALDSVLDSVGKIKQMACYCGASGCRKRMF 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02034 762 MobiDBLite consensus disorder prediction 63 105 - -
Trre13g02034 762 Gene3D - 271 457 IPR036987 -
Trre13g02034 762 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 90 762 IPR025794 GO:0016571
Trre13g02034 762 ProSiteProfiles SET domain profile. 584 732 IPR001214 GO:0005515
Trre13g02034 762 MobiDBLite consensus disorder prediction 214 268 - -
Trre13g02034 762 ProSiteProfiles Pre-SET domain profile. 519 581 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre13g02034 762 MobiDBLite consensus disorder prediction 40 133 - -
Trre13g02034 762 ProSiteProfiles YDG domain profile. 288 441 IPR003105 -
Trre13g02034 762 Pfam SET domain 595 732 IPR001214 GO:0005515
Trre13g02034 762 SUPERFAMILY PUA domain-like 270 460 IPR015947 -
Trre13g02034 762 ProSiteProfiles Post-SET domain profile. 746 762 IPR003616 -
Trre13g02034 762 MobiDBLite consensus disorder prediction 234 268 - -
Trre13g02034 762 SMART G9a_1 283 445 IPR003105 -
Trre13g02034 762 Pfam Pre-SET motif 475 576 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre13g02034 762 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 63 755 - -
Trre13g02034 762 SUPERFAMILY SET domain 468 738 IPR046341 -
Trre13g02034 762 Coils Coil 196 216 - -
Trre13g02034 762 SMART set_7 584 738 IPR001214 GO:0005515
Trre13g02034 762 Gene3D SET domain 465 762 IPR046341 -
Trre13g02034 762 Coils Coil 59 79 - -
Trre13g02034 762 SMART preset_2 472 568 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre13g02034 762 Pfam SAD/SRA domain 287 445 IPR003105 -
Trre13g02034 762 MobiDBLite consensus disorder prediction 45 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02034 Trre-Chr13 17583449 17591101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02034 274 762 EF-hand Containing Proteins AT5G13960 66.327 0.0 710
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre13g02034 SAD_SRA 1.8e-50 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02034 K11420 - gmx:100795584 952.199