Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02024 ATGAAAATCTCTAACAAACAACCGCTTAGTCCTTTCGACGATCCGAACTTGATGAAGGGTGATTTGAATGGGGGATGTTTCAAGGTAAGGGTTCTGAAGAAATGGACTGTGTACGACGTGGTCATACCTGGAAAGATCGTCTCGATTGATATGATGTTAATGGATAACAATGGACATAGAATCGAGGCTTCCATTCCTGAAAGTTTGCGTTCTTTGTTTGATTTCCAGTTAGTTGAAGGAAACATTTACCTGATTTCAAACTTATCTGTTAAGTACAACCTGGGTTCTAAGCTTGCAAGTTTACATAACAATTTGTTGGAATTTAACTTTGGAACTGTTGTTAAGTTGTTTTGGGCTTATGGAATGCCTCCTCCTGGTGAATCTTTTGTTGGTTCTATTGATGTTCTCAAAGTAGATCAGGGTCCTAAATATATGTTAGATGTTTTTGGAGTAGTTACTTATATCATACATGACAAAATTTTCTATCTCAATGGTACCACCACAAAGACCCTTTCCTTGAAACTGACTGATAACAGTGATTGTAAAACTTCATTTGAAGTTGAGTTGTATGGAGAAATGGTTGATCAATTTCGTGATCAGATGCAAAACATCGCAATGGGTTTGCCTTTGATTTCTCTGCAGTGTGCAAGGATTTCTGAAAGCAAAACCATTGTCCAGAATGTTGATGGTGTCACCAAGCTATGTGTTAATCCTACCTTTCATGAGGCTAAGAAGTTTAGGAAAGTTCTTGTCCTTGCCTTGAACAAAACTAAGAAAAAGTTTGGCATTCTGCCGCCTGAGAGATCAATGGTGATCAACTTAGAAACCCCCTATCAGTGTAAGACTATTGCCCAGCTTAAGGGAGACTCGGAGCTTGGTATTTTTGTTGTAACTGCTAGACTTGCTGATATGTCCGCTGTAAATGCTTGGTGGTACCCAGTATGCCATTGTCAAGTTATAATTGAATCTTATCTTGGTTCCTTTTTCTGCCACAAGTGTCGTGCCACTGATTTTGAACCATTGCGCAGGTATAGGGCTAAACTTGTTCTTCAGGATCAAAGTGGTACACTCCATCTCGAATCATTTGATGATGTTCTCCTCCCTGTGGCTTCTGTTAATCCTAGGAAGCCGGGAATTGCTAGATATTACTTTCCTCGAGCATTTGATCACATAACTGGAAAGAACATAGTATATGTTGTTGAAAAAAAGAAACAAAGTCCCATAATCCGTGAGACATATGAGCTTCTATGTGTTTCTGATGATCAGAAAATTATCAACCATTTTGCTGAGAAGGCTGTTGCCAGTCAGAACTCAAAGATGTTTTCAAACATCTTGAGTTCAGAATGCAATGTCATTAAGACCACCATGTATGATTCAACTGTATCCACCCCAGATCGTTTATTTTCAAACTACATGGTCTCTATGGATGCTAGAGGTGCAAAATCTGAGGTTGGTGAGAGTTCAAATGCTGGTTTAAGAATTTCAGCCATTGAAGATACAGTATCAAGATCTGTTCGCGCTAGGCACCGCTGA 1533 0.392 MKISNKQPLSPFDDPNLMKGDLNGGCFKVRVLKKWTVYDVVIPGKIVSIDMMLMDNNGHRIEASIPESLRSLFDFQLVEGNIYLISNLSVKYNLGSKLASLHNNLLEFNFGTVVKLFWAYGMPPPGESFVGSIDVLKVDQGPKYMLDVFGVVTYIIHDKIFYLNGTTTKTLSLKLTDNSDCKTSFEVELYGEMVDQFRDQMQNIAMGLPLISLQCARISESKTIVQNVDGVTKLCVNPTFHEAKKFRKVLVLALNKTKKKFGILPPERSMVINLETPYQCKTIAQLKGDSELGIFVVTARLADMSAVNAWWYPVCHCQVIIESYLGSFFCHKCRATDFEPLRRYRAKLVLQDQSGTLHLESFDDVLLPVASVNPRKPGIARYYFPRAFDHITGKNIVYVVEKKKQSPIIRETYELLCVSDDQKIINHFAEKAVASQNSKMFSNILSSECNVIKTTMYDSTVSTPDRLFSNYMVSMDARGAKSEVGESSNAGLRISAIEDTVSRSVRARHR 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02024 510 Gene3D - 273 411 IPR012340 -
Trre13g02024 510 CDD RPA1_DBD_A_like 28 114 - -
Trre13g02024 510 Gene3D - 128 251 IPR012340 -
Trre13g02024 510 SUPERFAMILY Nucleic acid-binding proteins 278 369 IPR012340 -
Trre13g02024 510 SUPERFAMILY Nucleic acid-binding proteins 143 249 IPR012340 -
Trre13g02024 510 SUPERFAMILY Nucleic acid-binding proteins 23 115 IPR012340 -
Trre13g02024 510 Gene3D - 18 117 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02024 Trre-Chr13 17505056 17507329 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02024 27 365 Core DNA Replication Machinery Family AT4G19130 23.978 4.18e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02024 - K07466 tpra:123922259 393.275