Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02023 ATGGCAATATCTTCGCCTCCTTTCCATCTTACTACAGTCAGTTCCCCCAATAATTTGCATTCTCACTTTTCTTACAAGTGGGAGATAGTGGTCAATACCTCAATTGCTAGGGCCAGAAACGTTTTGACCTTCCCAAGGGAATACTCAAGAAATTGTTTATCAACCTCGGATAATTTCATATATATGATTGATGTTTCGACTGGAAGAATTTTCAAATCCCCCATTTTTACTTCTGCCAAAAATAGAGAGGATAGATATGTTTATGCAGGCTGGAAGACTTTCGTGAAGGAGAAAAAACTAAAGTTCAAAGATAAAGTTGTATTTGATGCCAAAAATGGAAATCATGTTATTGAGGTTCAAATACATCGTCGGCGGAGTTCTAATCGTTGA 390 0.3718 MAISSPPFHLTTVSSPNNLHSHFSYKWEIVVNTSIARARNVLTFPREYSRNCLSTSDNFIYMIDVSTGRIFKSPIFTSAKNREDRYVYAGWKTFVKEKKLKFKDKVVFDAKNGNHVIEVQIHRRRSSNR 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02023 129 ProSiteProfiles B3 DNA-binding domain profile. 27 125 IPR003340 GO:0003677
Trre13g02023 129 Pfam B3 DNA binding domain 36 124 IPR003340 GO:0003677
Trre13g02023 129 SUPERFAMILY DNA-binding pseudobarrel domain 30 124 IPR015300 -
Trre13g02023 129 Gene3D - 8 126 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02023 Trre-Chr13 17503817 17504450 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre13g02023 B3 7.2e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02023 - K15259 tpra:123882118 132.109