Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02016 ATGGGTGTTGGTGGTAATTTCTGGGAGTTGTTGAAGCCCTATGCACGCAATGAAGGTTTTGATTTCTTGAGAAACAAGCGAGTTGCTGTTGACTTATCGTTTTGGATTGTTCAACATAACAATGCTATCAAAACCCATGTCATTAAACCTCACCTCAGACTCACTTTCTTCCGTACAATTAATCTTTTTTCTAAGTTTGGAGCATTTCCCGTGTTTGTTGTTGATGGGACTCCATCGCCATTGAAATCACAAGCTAGGATTGCTAGATTTTTCCGGTCATCTGGAATTGAATTGACTAGCTTGCCGCCGGTACCTGGAGCCGGTGTTTCAGCTGAGAGGAATAGTTCATTTTCAAGATGTGTTCAAGACTGTGTGGAACTTGCTAAGCTACTTGGGATTCCTGTACTGAAGGCTAAAGGAGAGGCTGAAGCACTCTGTGCCCAGTTAAATAGTGAAGGTCATGTAGATGCATGCATAATACCTGACAGTGATGCATTCCTCTTTGGGGCCAAATGCGTTATAAAATCTTTCGCTCCCAATTCGAAAGAACCGTTTGAATGCTACAACATGTCAGATATTGAAGCTGGGCTTGGATTGAAAAGGAAACACTTAATAGCTATCTCTCTTTTGGTTGGAAATGATCACGATTTGACTGGTGTTCAAGGGATTGGACTTGACAGTGCTCTTCGTTTTGTTCAAGGTTTTAGTGAAGATGATGTATTGAATAGATTACATGAGATAGGCAAAGGGAATGCTTTACAAATTCCTGTTGACATTAAATCTGAAGACAATATGGATATTGACGGGAGCTCCTCAAATACGAAACAACCTCACTGCTCATTCTGTGGGCATCCAGGCAGCAAAAAAGATCATACGAAGTTTTCGTGTGAATTTTGTGTCACAGATGACAATGAAAGTTGCCTTAAAAAACCAGAGGGTTTTAAATGTGATTGCTTCTCTTGTGGTATGAATAGGAAACATAAGGAGCAGAAAAAGATGGAAAATTGGCACACAAGAATTTGTGAAAAGATTGCAAAGGAGCCAAATTTTCCAAAGGATGAAATCATTGATATGTATTTATGCAATGACAATGGTTACTTTTCTGCAAATGATGGCCCTCAGATCTCATGGGAACATCCAAAAGTTGAACTCCTGATTGGTTTTTTAAACTTCCATCAGCACTGGGATCCGTCATACATTCGACGGATAATGTTTCCTATGATGTCCACCATCTTTTTGAGAGAAATGGCTACAACTGCAACAGATAGTTTGTTATTTGGACAGTTTGAGTTTGATTCTTTAAAACGTGTGAAAACGAGATACGGATATCAGTTTTATGTTGTCAAGTGGAAACGTGTGATGGGAAGCAACGTTGCTTCTAAAACTCCATCAAATCAATCTGGCACGCAGCAAGATGCTATAGAGCTCGATGAAACGGTGGATCTACATCTTCTGGACGATTGCGATTTGCCTGAGACTTGTGAAGAAGGTGGATGTAGTTTTCTGTTGACCGATGAAAATATGGACCTTATAGGGGCTGCTTTTCCGGAAGAAGTGAAAAGGTTTTGGCAGGAACAGGAACTGAAGGATTCGAAAAGAAAAAAGAATCCAACCTCAAGATCTAAAGAAAATGAAACGTCCTCAACATCACCAAACTCAAAAGGTGTCCAGCTAAATATAACCGAGTTCTTCCCAACAACCAAAAGTAAAAATATTCCAAAACATGGAGAAGAGTCATCATCATCCAAGAAAAATGATAGCCCCGACAGTGGAGGCTCAAAAATGAAGAGGAAATCGTCAAGTCCTAATATTCCGAAATCTGTTAGGCGTCGCCTTTTGTTTGACTAG 1848 0.4004 MGVGGNFWELLKPYARNEGFDFLRNKRVAVDLSFWIVQHNNAIKTHVIKPHLRLTFFRTINLFSKFGAFPVFVVDGTPSPLKSQARIARFFRSSGIELTSLPPVPGAGVSAERNSSFSRCVQDCVELAKLLGIPVLKAKGEAEALCAQLNSEGHVDACIIPDSDAFLFGAKCVIKSFAPNSKEPFECYNMSDIEAGLGLKRKHLIAISLLVGNDHDLTGVQGIGLDSALRFVQGFSEDDVLNRLHEIGKGNALQIPVDIKSEDNMDIDGSSSNTKQPHCSFCGHPGSKKDHTKFSCEFCVTDDNESCLKKPEGFKCDCFSCGMNRKHKEQKKMENWHTRICEKIAKEPNFPKDEIIDMYLCNDNGYFSANDGPQISWEHPKVELLIGFLNFHQHWDPSYIRRIMFPMMSTIFLREMATTATDSLLFGQFEFDSLKRVKTRYGYQFYVVKWKRVMGSNVASKTPSNQSGTQQDAIELDETVDLHLLDDCDLPETCEEGGCSFLLTDENMDLIGAAFPEEVKRFWQEQELKDSKRKKNPTSRSKENETSSTSPNSKGVQLNITEFFPTTKSKNIPKHGEESSSSKKNDSPDSGGSKMKRKSSSPNIPKSVRRRLLFD 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02016 615 MobiDBLite consensus disorder prediction 526 615 - -
Trre13g02016 615 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 70 89 IPR006084 -
Trre13g02016 615 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 128 145 IPR006084 -
Trre13g02016 615 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 204 219 IPR006084 -
Trre13g02016 615 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 149 169 IPR006084 -
Trre13g02016 615 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 25 39 IPR006084 -
Trre13g02016 615 SMART xpgn3 1 96 IPR006085 GO:0004518
Trre13g02016 615 MobiDBLite consensus disorder prediction 526 541 - -
Trre13g02016 615 FunFam Flap endonuclease GEN-like 1 199 256 - -
Trre13g02016 615 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 552 IPR006084 -
Trre13g02016 615 Gene3D - 199 261 - -
Trre13g02016 615 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 199 416 IPR036279 -
Trre13g02016 615 Gene3D - 5 198 - -
Trre13g02016 615 Pfam XPG N-terminal domain 1 89 IPR006085 GO:0004518
Trre13g02016 615 SUPERFAMILY PIN domain-like 6 214 IPR029060 -
Trre13g02016 615 MobiDBLite consensus disorder prediction 571 593 - -
Trre13g02016 615 SMART xpgineu 129 199 IPR006086 GO:0004518
Trre13g02016 615 MobiDBLite consensus disorder prediction 542 568 - -
Trre13g02016 615 CDD PIN_GEN1 2 203 - -
Trre13g02016 615 FunFam Flap endonuclease GEN-like 1 2 198 - -
Trre13g02016 615 Pfam XPG I-region 132 214 IPR006086 GO:0004518
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02016 Trre-Chr13 17444826 17449646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02016 1 314 Core DNA Replication Machinery Family AT5G26680 26.346 9.56e-17 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02016 K15338 - gmx:100791251 925.62