Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02013 ATGTTGGGTTCAGGGACCAATTTGGTCACAACTGTTATTGGATTTGGTATGAGTGCCACTTTCATTGTGTTTGTCTGCACAAGAATTATTTGTGGAAGGCTTAGAGGTGGTGTTGAATCTAGGATGATGTATGAGATTGAATCAAGATTTGATATAGAACAGCCAGAACATCATGTTAATGACCCTGACACTGAACCAGTTCTGATTGAAGCAATCCCTACTTTGAAGTTCAATCAAGAGGCTTTCAGTTCCATCGAAGATACACAGTGTGTAATATGTTTGGCAGACTACAAAGAAAGAGAAATATTGCGCATCATGCCCAAATGCGGACACACTTTTCATCTTTCGTGCATTGATATATGGCTGAGGAAACAATCTACATGTCCAGTGTGCCGTCTACCATTGAAAAACTCTTCCGAAACAAAACACGTGAGACCTGTGACATTCACCATGAGCCAACCTCTTGACGAGTCACACACATCGGATAGGAACACAGATATCGAGAGGCACGCTGATCCTACTGCTGTTAACTCCATACAACCAACTTCCGCAGAATCAGAAGTAAGGCAATGA 573 0.4188 MLGSGTNLVTTVIGFGMSATFIVFVCTRIICGRLRGGVESRMMYEIESRFDIEQPEHHVNDPDTEPVLIEAIPTLKFNQEAFSSIEDTQCVICLADYKEREILRIMPKCGHTFHLSCIDIWLRKQSTCPVCRLPLKNSSETKHVRPVTFTMSQPLDESHTSDRNTDIERHADPTAVNSIQPTSAESEVRQ 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02013 190 Pfam Ring finger domain 89 132 IPR001841 -
Trre13g02013 190 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 50 138 IPR013083 -
Trre13g02013 190 MobiDBLite consensus disorder prediction 151 190 - -
Trre13g02013 190 ProSiteProfiles Zinc finger RING-type profile. 90 132 IPR001841 -
Trre13g02013 190 CDD RING-H2_EL5-like 89 132 - -
Trre13g02013 190 SMART ring_2 90 131 IPR001841 -
Trre13g02013 190 SUPERFAMILY RING/U-box 79 139 - -
Trre13g02013 190 PANTHER OS11G0150450 PROTEIN 1 165 - -
Trre13g02013 190 MobiDBLite consensus disorder prediction 175 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02013 Trre-Chr13 17431208 17432761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02013 70 135 C3H Transcription Factor Family AT4G10160 51.515 5.54e-20 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02013 - - ccaj:109802319 356.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02013 13 17431208 17432761 Trre13g02013 13 17431208 17432761 ECH