Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02009 ATGAAAGACACTTGCTGGTTCTTTAAGATCATGGTGGAAGAAGCTGTTGCAGTTGATGCAAGTTGTTCAACAGAAGATTGGTTGTTACATGCAAAGGAACTTGTTCCTATTGCTCTTGAAAAAGCAAGAGAGGTTAAAGGTTTTCCTATTAGATGGAAAATGATTATTTCTAGATTAGAACAGATTCCATCCATGTTATCGAATTTATCAAGCCATCCATGTTTCTCGAAGAATGCTCTTTGTAAGGAGCAATTGCAAGCTGTGTCGAATTCCCTCAGAGATGCGATCGAATCAGCTGAATTGTGTTTGAAGGAGAAATATGAAGGCAAGCTTCGGATGCAGAGTGATTTGGATGCATTAATTGGGAAAATGGATTTGAATTTACGAGATTGTGGACTTTTGATCAAAACTGGCATGCTCGGCGAGGCTACTTTGCCGTTGTCAGTGGCGTCCGTGTCAGGTTCTGTTGAACAATCAGATTCTGCAGCACACAACAACATAAGGGAGTTACTCGCACGCCTTCAGATCGGTCACTTAGAAGCGAAACACAAAGCTTTGGACAGTGTTGTTGAGGTTATGAAAGAAGATGAGAAGAATGTTTTGGCTGTTATGAGTAGGAGTAATATATCGGCACTGGTTCAATTGCTTACAGCAACATCAACAAGGATAAGAGAGAAAACAGTTACTGTTATATGCTCGCTTGCCGAATCGGGTAGCTGCGAGGATTGGTTAGTTTCTGAAGGTGTTCTTCCAGCTCTTATAAGACTTGTTGAATCAGGAAGTGCTGTAGGTAAAGAAAAGGCTGCGATATCGCTTCAGAGGTTATCAATGTCGGCTGAAACATCGCGTGAAATAGTCGGACATGGTGGCGTTTGTCCGCTTGTTGAGCTTTGTCAAACCGGCGATTCTGTTTCGCAGGCTGCAGCAGCTTGTACATTGAAGAATATTTCAGCTGTTCCTGAGGTGAGACAGGTTTTGGCTGAACAAGGGATTGTTAGGGTTATGATCGATTTGTTAACTTGTGGAATGTTGTTAGGTTCGAAAGAATATGCAGCAGAATGTTTGCAGAATCTCACTGCAAGCAATGAGAGTCTAAAAAGAAGTGTTGTATCCGAAGGCGGTGTTAGGAGTCTTTTAGTTTATCTTGACGGTCCACTTCCTCAAGAATCCGCGGTCGCGGCAATAAGGAATTTGATCGGATCAGTTTCCGAGACAAGTTTGGTTTCATTAGGATTACTTCCACGTTTGGTTCATGTTTTGAAATCCGGATCATCAGGAGCACAACAAGCAGCTGCATCAGCAATCTGCCGAGTTTGCAGCTCGACTGTCATGAAGAAATTGGTCGGCGAAGCCGGTTGCATTCCCCTCCTTGTTAAGATGCTTGAGGCTAAACCAAGTAGTGCTAGAGAAATTTCTGCACAAGCATTAGCAAGCTTGATGACCGTGTCTTATAATAGAAAAGAAGTTAAAAAAGACGATAAAAGTGTGCCGAATTTGGTTCAGTTACTTGATCCTAGTCCTCAAAACAATGCAAAAAAATATGCAGTTACTTGCCTTGGATTGATTTCTTCAAGTAAGAAATGTAAGAAGCTAATGATCTCATATGGTGCTATTGGATATTTGAAGAAACTTACTGAGATGGATATTCCAGGAGCTCAAAAGCTGCATGAGAGATTGGAAAGAGGGAAATTAAGAAGTTTGTTTGGCAAGAAATAG 1716 0.4149 MKDTCWFFKIMVEEAVAVDASCSTEDWLLHAKELVPIALEKAREVKGFPIRWKMIISRLEQIPSMLSNLSSHPCFSKNALCKEQLQAVSNSLRDAIESAELCLKEKYEGKLRMQSDLDALIGKMDLNLRDCGLLIKTGMLGEATLPLSVASVSGSVEQSDSAAHNNIRELLARLQIGHLEAKHKALDSVVEVMKEDEKNVLAVMSRSNISALVQLLTATSTRIREKTVTVICSLAESGSCEDWLVSEGVLPALIRLVESGSAVGKEKAAISLQRLSMSAETSREIVGHGGVCPLVELCQTGDSVSQAAAACTLKNISAVPEVRQVLAEQGIVRVMIDLLTCGMLLGSKEYAAECLQNLTASNESLKRSVVSEGGVRSLLVYLDGPLPQESAVAAIRNLIGSVSETSLVSLGLLPRLVHVLKSGSSGAQQAAASAICRVCSSTVMKKLVGEAGCIPLLVKMLEAKPSSAREISAQALASLMTVSYNRKEVKKDDKSVPNLVQLLDPSPQNNAKKYAVTCLGLISSSKKCKKLMISYGAIGYLKKLTEMDIPGAQKLHERLERGKLRSLFGKK 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02009 571 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 19 568 - -
Trre13g02009 571 Gene3D - 387 465 IPR011989 -
Trre13g02009 571 Gene3D - 466 555 IPR011989 -
Trre13g02009 571 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 248 290 IPR000225 GO:0005515
Trre13g02009 571 SUPERFAMILY ARM repeat 167 550 IPR016024 -
Trre13g02009 571 SMART arm_5 278 318 IPR000225 GO:0005515
Trre13g02009 571 SMART arm_5 482 524 IPR000225 GO:0005515
Trre13g02009 571 SMART arm_5 441 481 IPR000225 GO:0005515
Trre13g02009 571 SMART arm_5 319 360 IPR000225 GO:0005515
Trre13g02009 571 SMART arm_5 401 440 IPR000225 GO:0005515
Trre13g02009 571 SMART arm_5 361 400 IPR000225 GO:0005515
Trre13g02009 571 SMART arm_5 196 236 IPR000225 GO:0005515
Trre13g02009 571 Pfam Armadillo/beta-catenin-like repeat 283 318 IPR000225 GO:0005515
Trre13g02009 571 Gene3D - 156 385 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02009 Trre-Chr13 17386997 17389878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02009 416 546 U-box Gene Family AT2G23140 32.576 5.97e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02009 - - gmx:100789140 892.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02009 13 17386997 17389878 Trre13g02009 13 17386997 17389878 ECH