Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01998 ATGCTTGAGAAAGAAGTGATTGAACCCAGGAATCAGGAACGGTACCAAGGCAAAAACCCTTACTATAGATATGACATGGAGCCTTTTAGGGTCAGGAGGAAAGATTTTTGGTTGCTCTCTACTGTCACAAAACTTTTGAACGAATTCATTCCAAAACTCTCGCATGATGCAGATGGTCTCATATTTCAGGGATGGGACGATCCTTATGTACCTCGCACTCATGAAGGTCTCTTAAAGTGGAAGTATGCTGATCTGGATTCAGTTGATTTTCTCCTTGAGATTGATGATGATCGTCAGCTTCTTCTTCTCTATGAACGTGGAAAAAAGAAACTCATGGAAGGGTATATTGTTGCATTCGAAGCAAGTATTTTTGGGGAAGTTTCTATAGATTTTGCTGATTATGCCGAAGCTACAAAGATTTCTTTAGTTTCTCTTCCCATCAAGAATTCACATTCTGATGCTGTCTTGCATATTGATGAGCAAAGTGAAGCCAATGCCAACAAAGGGTCAAGAAAGAAAAGAGAATTTAGAAATAGAATCATGGCTCAAGAGAATGATGGCTGCCGAGTTTCCACCTTGAATGAAAACAAGACTCCAGCGCCAAGAGAATTTCCCCAAACTGACACCATCAAGATTATATAG 642 0.3988 MLEKEVIEPRNQERYQGKNPYYRYDMEPFRVRRKDFWLLSTVTKLLNEFIPKLSHDADGLIFQGWDDPYVPRTHEGLLKWKYADLDSVDFLLEIDDDRQLLLLYERGKKKLMEGYIVAFEASIFGEVSIDFADYAEATKISLVSLPIKNSHSDAVLHIDEQSEANANKGSRKKREFRNRIMAQENDGCRVSTLNENKTPAPREFPQTDTIKII 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01998 213 Gene3D DNA ligase/mRNA capping enzyme 1 81 - -
Trre13g01998 213 PANTHER MRNA-CAPPING ENZYME 1 118 - -
Trre13g01998 213 Pfam mRNA capping enzyme, catalytic domain 1 81 IPR001339 GO:0004484|GO:0005524|GO:0006370
Trre13g01998 213 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 2 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01998 Trre-Chr13 17321538 17324360 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01998 1 119 Protein tyrosine phosphatase (PTP) family AT3G09100 70.000 4.72e-51 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01998 K13917 - gmx:100803597 233.032