Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01994 ATGCCTTCTAGTGCAATCTCACAATCAACTCCTACTTTGGTTAAATCCATGTTCAACTCACCTGGTCTATCATTAGCACTTCAAACAAATATGGAAGGACAAGGTGGTGATGTGAATAGATTAATGGCAGAGAATTTTCATGGTTTGAGAAGGAACAGAGAAGAAGATGAAGAACATGAAAGCAGATCTGGTGGTAGTGATAACATAGATGGTGTTTCTGGTGATGATGCCGACAATCCACCAAGAAAAAAACGTTATCACCGACATACTCCTCAACAAATTCAAGAACTTGAATCGATGTTTAAAGAGTGTCCTCATCCTGATGAAAAACAAAGGCTTGAACTTAGCAAAAGGCTTTGTTTGGAAACAAGACAAGTTAAGTTTTGGTTCCAAAATAGAAGAACACAAATGAAGACTCAATTGGAGCGCCATGAGAATTCACTACTTAGACAAGCAAATGATAAGCTAAGAGTTGAGAACATGTCAATAAGAGAAGCAATGAGGAACCCTATGTGCTCAAATTGTGGAGGACCAGCAATTATTAATGAAATTTCACTTGAAGAACAACATCTAAGAATTGAAAATTCAAGATTAAAAGATGAACTAGAAAAAGTTTGTACACTTGCTAGCAAGTTTTTAGGCCGTCCGATTACGTCGTTACCAAACTCAAGTTTAGAATTTAGTTTTGTTGGTTTGAACAACAACAATACTTTGCCTTCAACATTACCCTTAGGACAAGATTTTGGCATGGTATCAATTTCACCACCTTCAACAATAAGAGCAACAAATAGTAGTAATGGTTTTGATAGATCAATAGAGAGGTCTATGCTTCTTGAACTTGCTTTGGCTGCAATGGATGAGTTAGTGAAAATGGCACAAACTAATGAGCCCCTTTGGATTAGAAGTATTGAAGGTGGAAGAGAAATTCTTAACCGTGAGGAATATACAAGGACAATAAGTACTTCTTGCATTGGTTTGAAACCAAATGGTTTTGTCTCTGAGGCTTCTAGAGAAAGTGGTGTTGTTGTCATAAACAGCTTGGCTCTTGTTGAAACTTTAATGGACTCAAATCGATGGTCAGAGATGTTCCCTTGTGTGATTGCAAGAACATCAACAAATGAAGTGATATCTAGTGGAATAAATGGAACTAGAAATGGTGCTCTTCAATTGATGCAAGCTGAACTTCAAGTACTATCTCCATTGGTTCCTATTCGTTTGGTGAATTTTCTAAGGTTTTGCAAGCAGCATGCAGAAGGGGTATGGGCAGTGGTTGATGTGTCTATAGATTCCATCTCACAAACTTCAGCTGGTGCACCCATTTTTTTTAACTGTAGGAGGCTTCCTTCTGGTTGTTTGGTTCAAGATATGCCAAATGGTTACTCTAAGGTGACATGGGTGGAGCATGCGGAATACGATGAAAGCCAAGTTCACCAACTCTATAGGCCCTTGCTAAGCTTAGGCATGGGATTTGGTGCACAACGTTGGGTTGCAACCCTACAACGCCAATGTGAATGTCTAGCCATCTTAATGTCATCTACACTTCCATCTAGAGAACAATCAGCAATAAGCTCGGGAGGAAGGCGTAGCATGCTAAAGCTAGCACAGCGGATGACAAACAACTTTTGCGCCGGAGTTTGTGCATCAACGGTTCACAAATGGAACAAGTTGAATGCATCGGGGAATGTAGGCGAGGATGTTAGGGTGATGACGCGAAAGAGTGTTGATGATCCTGGTGAGCCACCGGGGATTGTGCTCAGTGCGGCAACCTCCGTTTGGCTACCTGCTTCTCCGCAAAAAGTCTTCAATTTCTTACGAAACGAGAGGCTTAGAAGCGAATGGGACATACTCTCCAATGGTGGACCTATGCAAGAGATGGCTCACATTGCCAAAGGACATGACCATGGCAACTGTGTCTCCCTCCTACGAGCTAGTGGTATTAATTCAAACCAAAGTAGCATGTTGATTCTCCAGGAAACTTGCACGGATGCGTCGGGTTCAATGGTTGTGTACGCGCCTGTAGATATACCTGCAATGCATGTAGTAATGAACGGCGGCGATTCAGCCTACGTTGCACTTCTTCCATCGGGTTTTGCCATCTTGCCTAGTGGACATAGCAACGATAGTGATAATCACAGAGGCGGATCGCAACATGGAGCAAATGGATCTCTTTTGACGGTCGCATTTCAGATACTTGTGAATAGCCTTCCCACGGCGAAGCTCACGGTGGAATCAGTGGAGACAGTGAACAATCTCATTTCATGTACCGTTCAAAAGATAAAAGCAGCACTTGAATGTGAGAGTTGA 2304 0.4175 MPSSAISQSTPTLVKSMFNSPGLSLALQTNMEGQGGDVNRLMAENFHGLRRNREEDEEHESRSGGSDNIDGVSGDDADNPPRKKRYHRHTPQQIQELESMFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENSLLRQANDKLRVENMSIREAMRNPMCSNCGGPAIINEISLEEQHLRIENSRLKDELEKVCTLASKFLGRPITSLPNSSLEFSFVGLNNNNTLPSTLPLGQDFGMVSISPPSTIRATNSSNGFDRSIERSMLLELALAAMDELVKMAQTNEPLWIRSIEGGREILNREEYTRTISTSCIGLKPNGFVSEASRESGVVVINSLALVETLMDSNRWSEMFPCVIARTSTNEVISSGINGTRNGALQLMQAELQVLSPLVPIRLVNFLRFCKQHAEGVWAVVDVSIDSISQTSAGAPIFFNCRRLPSGCLVQDMPNGYSKVTWVEHAEYDESQVHQLYRPLLSLGMGFGAQRWVATLQRQCECLAILMSSTLPSREQSAISSGGRRSMLKLAQRMTNNFCAGVCASTVHKWNKLNASGNVGEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPASPQKVFNFLRNERLRSEWDILSNGGPMQEMAHIAKGHDHGNCVSLLRASGINSNQSSMLILQETCTDASGSMVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAILPSGHSNDSDNHRGGSQHGANGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALECES 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01994 767 ProSiteProfiles 'Homeobox' domain profile. 80 140 IPR001356 GO:0003677
Trre13g01994 767 SMART HOX_1 81 144 IPR001356 GO:0003677
Trre13g01994 767 Coils Coil 149 169 - -
Trre13g01994 767 CDD START_ArGLABRA2_like 274 504 - -
Trre13g01994 767 MobiDBLite consensus disorder prediction 52 90 - -
Trre13g01994 767 ProSitePatterns 'Homeobox' domain signature. 115 138 IPR017970 GO:0000981|GO:0006355
Trre13g01994 767 SMART START_1 279 505 IPR002913 GO:0008289
Trre13g01994 767 ProSiteProfiles START domain profile. 270 508 IPR002913 GO:0008289
Trre13g01994 767 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 79 763 IPR042160 -
Trre13g01994 767 Pfam START domain 279 505 IPR002913 GO:0008289
Trre13g01994 767 Pfam Homeodomain 83 138 IPR001356 GO:0003677
Trre13g01994 767 SUPERFAMILY Bet v1-like 533 760 - -
Trre13g01994 767 CDD homeodomain 82 140 IPR001356 GO:0003677
Trre13g01994 767 FunFam Homeobox-leucine zipper protein GLABRA 2 279 504 - -
Trre13g01994 767 SUPERFAMILY Bet v1-like 272 505 - -
Trre13g01994 767 SUPERFAMILY Homeodomain-like 69 140 IPR009057 -
Trre13g01994 767 Gene3D - 71 157 - -
Trre13g01994 767 Coils Coil 181 201 - -
Trre13g01994 767 FunFam Homeobox-leucine zipper protein HDG1 71 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01994 Trre-Chr13 17279125 17288019 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01994 5 767 Homeobox Transcription Factor Family AT3G61150 66.162 0.0 995
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre13g01994 START 3.7e-54 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01994 K09338 - gmx:100783614 1221.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g01994 13 17279125 17288019 Trre13g01994 13 17279125 17288019 ECH