Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01993 ATGAGTTTTGGTAACAATAAGCCAGGTTGTGGTGAACAAGCTAAAATCAGTTCAGAATCAGATATTGCTTTTATCAACAACAACAGAATAATAATGCCTTCTAGTGCAATCTCACAATCAACTCCTACTTTGGTTAAATCCATGTTCAACTCACCTGGTCTATCATTAGCACTTCAAACAAATATGGAAGGACAAGGTGGTGATGTGAATAGATTAATGGCAGAGAATTTTCATGGTTTGAGAAGGAACAGAGAAGAAGATGAAGAACATGAAAGCAGATCTGGTGGTAGTGATAACATAGATGGTGTTTCTGGTGATGATGCCGACAATCCACCAAGAAAAAAACGTTATCACCGACATACTCCTCAACAAATTCAAGAACTTGAATCGATGTTTAAAGAGTGTCCTCATCCTGATGAAAAACAAAGGCTTGAACTTAGCAAAAGGCTTTGTTTGGAAACAAGACAAGTTAAGTTTTGGTTCCAAAATAGAAGAACACAAATGAAGACTCAATTGGAGCGCCATGAGAATTCACTACTTAGACAAGCAAATGATAAGCTAAGAGTTGAGAACATGTCAATAAGAGAAGCAATGAGGAACCCTATGTGCTCAAATTGTGGAGGACCAGCAATTATTAATGAAATTTCACTTGAAGAACAACATCTAAGAATTGAAAATTCAAGATTAAAAGATGAACTAGAAAAAGTTTGTACACTTGCTAGCAAGTTTTTAGGCCGTCCGATTACGTCGTTACCAAACTCAAGTTTAGAATTTAGTTTTGTTGGTTTGAACAACAACAATACTTTGCCTTCAACATTACCCTTAGGACAAGATTTTGGCATGGTATCAATTTCACCACCTTCAACAATAAGAGCAACAAATAGTAGTAATGGTTTTGATAGATCAATAGAGAGGTCTATGCTTCTTGAACTTGCTTTGGCTGCAATGGATGAGTTAGTGAAAATGGCACAAACTAATGAGCCCCTTTGGATTAGAAGTATTGAAGGTGGAAGAGAAATTCTTAACCGTGAGGAATATACAAGGACAATAAGTACTTCTTGCATTGGTTTGAAACCAAATGGTTTTGTCTCTGAGGCTTCTAGAGAAAGTGGTGTTGTTGTCATAAACAGCTTGGCTCTTGTTGAAACTTTAATGGACTCAAATCGATGGTCAGAGATGTTCCCTTGTGTGATTGCAAGAACATCAACAAATGAAGTGATATCTAGTGGAATAAATGGAACTAGAAATGGTGCTCTTCAATTGATGCAAGCTGAACTTCAAGTACTATCTCCATTGGTTCCTATTCGTTTGGTGAATTTTCTAAGGTTTTGCAAGCAGCATGCAGAAGGGGTATGGGCAGTGGTTGATGTGTCTATAGATTCCATCTCACAAACTTCAGCTGGTGCACCCATTTTTTTTAACTGTAGGAGGCTTCCTTCTGGTTGTTTGGTTCAAGATATGCCAAATGGTTACTCTAAGGTGACATGGGTGGAGCATGCGGAATACGATGAAAGCCAAGTTCACCAACTCTATAGGCCCTTGCTAAGCTTAGGCATGGGATTTGGTGCACAACGTTGGGTTGCAACCCTACAACGCCAATGTGAATGTCTAGCCATCTTAATGTCATCTACACTTCCATCTAGAGAACAATCAGCAATAAGCTCGGGAGGAAGGCGTAGCATGCTAAAGCTAGCACAGCGGATGACAAACAACTTTTGCGCCGGAGTTTGTGCATCAACGGTTCACAAATGGAACAAGTTGAATGCATCGGGGAATGTAGGCGAGGATGTTAGGGTGATGACGCGAAAGAGTGTTGATGATCCTGGTGAGCCACCGGGGATTGTGCTCAGTGCGGCAACCTCCGTTTGGCTACCTGCTTCTCCGCAAAAAGTCTTCAATTTCTTACGAAACGAGAGGCTTAGAAGCGAATGGGACATACTCTCCAATGGTGGACCTATGCAAGAGATGGCTCACATTGCCAAAGGACATGACCATGGCAACTGTGTCTCCCTCCTACGAGCTAGTGGTATTAATTCAAACCAAAGTAGCATGTTGATTCTCCAGGAAACTTGCACGGATGCGTCGGGTTCAATGGTTGTGTACGCGCCTGTAGATATACCTGCAATGCATGTAGTAATGAACGGCGGCGATTCAGCCTACGTTGCACTTCTTCCATCGGGTTTTGCCATCTTGCCTAGTGGACATAGCAACGATAGTGATAATCACAGAGGCGGATCGCAACATGGAGCAAATGGATCTCTTTTGACGGTCGCATTTCAGATACTTGTGAATAGCCTTCCCACGGCGAAGCTCACGGTGGAATCAGTGGAGACAGTGAACAATCTCATTTCATGTACCGTTCAAAAGATAAAAGCAGCACTTGAATGTGAGAGTTGA 2397 0.4139 MSFGNNKPGCGEQAKISSESDIAFINNNRIIMPSSAISQSTPTLVKSMFNSPGLSLALQTNMEGQGGDVNRLMAENFHGLRRNREEDEEHESRSGGSDNIDGVSGDDADNPPRKKRYHRHTPQQIQELESMFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENSLLRQANDKLRVENMSIREAMRNPMCSNCGGPAIINEISLEEQHLRIENSRLKDELEKVCTLASKFLGRPITSLPNSSLEFSFVGLNNNNTLPSTLPLGQDFGMVSISPPSTIRATNSSNGFDRSIERSMLLELALAAMDELVKMAQTNEPLWIRSIEGGREILNREEYTRTISTSCIGLKPNGFVSEASRESGVVVINSLALVETLMDSNRWSEMFPCVIARTSTNEVISSGINGTRNGALQLMQAELQVLSPLVPIRLVNFLRFCKQHAEGVWAVVDVSIDSISQTSAGAPIFFNCRRLPSGCLVQDMPNGYSKVTWVEHAEYDESQVHQLYRPLLSLGMGFGAQRWVATLQRQCECLAILMSSTLPSREQSAISSGGRRSMLKLAQRMTNNFCAGVCASTVHKWNKLNASGNVGEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPASPQKVFNFLRNERLRSEWDILSNGGPMQEMAHIAKGHDHGNCVSLLRASGINSNQSSMLILQETCTDASGSMVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAILPSGHSNDSDNHRGGSQHGANGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALECES 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01993 798 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 110 794 IPR042160 -
Trre13g01993 798 ProSiteProfiles START domain profile. 301 539 IPR002913 GO:0008289
Trre13g01993 798 FunFam Homeobox-leucine zipper protein GLABRA 2 310 535 - -
Trre13g01993 798 Pfam START domain 310 536 IPR002913 GO:0008289
Trre13g01993 798 FunFam Homeobox-leucine zipper protein HDG1 102 187 - -
Trre13g01993 798 ProSitePatterns 'Homeobox' domain signature. 146 169 IPR017970 GO:0000981|GO:0006355
Trre13g01993 798 SMART START_1 310 536 IPR002913 GO:0008289
Trre13g01993 798 ProSiteProfiles 'Homeobox' domain profile. 111 171 IPR001356 GO:0003677
Trre13g01993 798 CDD START_ArGLABRA2_like 305 535 - -
Trre13g01993 798 Pfam Homeodomain 114 169 IPR001356 GO:0003677
Trre13g01993 798 Gene3D - 102 188 - -
Trre13g01993 798 Coils Coil 180 200 - -
Trre13g01993 798 Coils Coil 212 232 - -
Trre13g01993 798 SMART HOX_1 112 175 IPR001356 GO:0003677
Trre13g01993 798 SUPERFAMILY Bet v1-like 564 791 - -
Trre13g01993 798 SUPERFAMILY Homeodomain-like 100 171 IPR009057 -
Trre13g01993 798 CDD homeodomain 113 171 IPR001356 GO:0003677
Trre13g01993 798 SUPERFAMILY Bet v1-like 303 536 - -
Trre13g01993 798 MobiDBLite consensus disorder prediction 83 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01993 Trre-Chr13 17279125 17288112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01993 31 798 Homeobox Transcription Factor Family AT3G61150 65.832 0.0 994
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre13g01993 START 4e-54 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01993 K09338 - gmx:100783614 1231.47