Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01990 ATGAACATGATGAGAAGATTGAAAAGCATTGCTTCTGGTAGAACCTCTATTTCATCAGATCCTGGTGGAGATTCTACCATAAAAAGAGCCAAGTTTGATCAAGAGACCGAAGGAAAAGGAAATGGGGAAACAAAGTATGTAGATGCATCCCAAGGAGATGCATCTAGTACATCTAATTCTAATGTTTCTGCGGTGGCTAAAACCGAGAAGTCAGGTTGTGAACAGCTTCCAAAAGAATTAAACGAAATGAAAATTAAAGATGATAAAAGCAAAAACAACAACAATACCGAAAAGGATATGGAGGCAACTATTGTGAACGGAAATGGAACGGAAACTGGTCAAGTAATTACAACTTCTATTGGTGGTCGAGATGGACAGCCAAAGAGGGTAATCTCATATGCGGCAGAACGTGTTGTTGGTACCGGTTCTTTTGGTGTTGTTTATCAGGCTAAGTGCGTTGAAACTGGCGAAGCCGTTGCAATAAAGAAAGTCTTACAAGACAAGAGATATAAAAATAGGGAACTCCAGGTTATGCGTATGCTTGAACATACCAATGTTCTTAAACTAAAGCACTGTTTCTACTCGACGGCTGAAAAAGAAGAGGTGTACCTTAACTTGGTTTTGGAGTACGTACCCGAAACTGTCTACAGAGTTTCAAAGCACTATGTCAGGATGCACCAACACATGCCTATAATTTATGTGCAACTATATATGTATCAGATATGCCGCGGTTTAAACTATATGCATCATGTGGTTGGAGTCTGTCACCGTGACATCAAACCTCAGAATTTATTGGTTAATCCTGCGAGTCATCAATTAAAGATATGTGATTTTGGTAGTGCAAAAATGTTGGTGCCTGGTGAACCCAACATATCATACATATGCTCACGGTATTATAGAGCTCCTGAACTTATATTCGGTGCAACAGAATACACAACTGCTATTGATGTTTGGTCTGCTGGCTGTGTTTTGGCTGAGCTTCTTCTAGGACAGCCAATTTTTCCTGGAGAGAGTGGCGTTGATCAGTTGGTAGAGATCATTAAGATTTTGGGAACACCAACAAGAGAAGAAATAAAGTGCATGAATCCAAATTACACTGAGTTCAAGTTTCCTCAGATTAAAGCTCACCCATGGCACAAGATCTTTCACAAAAGCATGCCTTCGGAAGCAGTGGACCTTGTGTCGAGGATGCTTCAGTATTCACCAAATCTACGTTGCACAGCTTTGGAAGCATGTGCACACTCCTTCTTTGATGATCTCCGAGACCCAAATGCCCGCTTACCGAATGGGCAAGAACTTCCCCCTTTGTTTGATTTTACAGCTCAAGAGTTGGCAGGCGCACCTGATGAGTTGCGTCGGCGTCTCATTCCTGAGCATGCAAGGAGTTGA 1389 0.4161 MNMMRRLKSIASGRTSISSDPGGDSTIKRAKFDQETEGKGNGETKYVDASQGDASSTSNSNVSAVAKTEKSGCEQLPKELNEMKIKDDKSKNNNNTEKDMEATIVNGNGTETGQVITTSIGGRDGQPKRVISYAAERVVGTGSFGVVYQAKCVETGEAVAIKKVLQDKRYKNRELQVMRMLEHTNVLKLKHCFYSTAEKEEVYLNLVLEYVPETVYRVSKHYVRMHQHMPIIYVQLYMYQICRGLNYMHHVVGVCHRDIKPQNLLVNPASHQLKICDFGSAKMLVPGEPNISYICSRYYRAPELIFGATEYTTAIDVWSAGCVLAELLLGQPIFPGESGVDQLVEIIKILGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKSMPSEAVDLVSRMLQYSPNLRCTALEACAHSFFDDLRDPNARLPNGQELPPLFDFTAQELAGAPDELRRRLIPEHARS 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01990 462 Gene3D Transferase(Phosphotransferase) domain 1 213 461 - -
Trre13g01990 462 Gene3D Phosphorylase Kinase; domain 1 116 212 - -
Trre13g01990 462 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 94 461 - -
Trre13g01990 462 MobiDBLite consensus disorder prediction 48 68 - -
Trre13g01990 462 MobiDBLite consensus disorder prediction 72 96 - -
Trre13g01990 462 FunFam Glycogen synthase kinase-3 beta 117 212 - -
Trre13g01990 462 ProSitePatterns Serine/Threonine protein kinases active-site signature. 254 266 IPR008271 GO:0004672|GO:0006468
Trre13g01990 462 MobiDBLite consensus disorder prediction 1 96 - -
Trre13g01990 462 ProSitePatterns Protein kinases ATP-binding region signature. 139 163 IPR017441 GO:0005524
Trre13g01990 462 ProSiteProfiles Protein kinase domain profile. 133 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01990 462 MobiDBLite consensus disorder prediction 9 23 - -
Trre13g01990 462 MobiDBLite consensus disorder prediction 26 42 - -
Trre13g01990 462 SUPERFAMILY Protein kinase-like (PK-like) 132 442 IPR011009 -
Trre13g01990 462 FunFam Shaggy-related protein kinase kappa 213 461 - -
Trre13g01990 462 Pfam Protein kinase domain 133 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01990 462 SMART serkin_6 133 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01990 462 CDD STKc_GSK3 131 420 IPR039192 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01990 Trre-Chr13 17227573 17230993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01990 139 420 Core Cell Cycle Gene Families AT1G76540 36.242 2.57e-55 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Trre13g01990 Pkinase 1.1e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01990 K00924 - gmx:100786458 815.068