Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01988 ATGAACAGTTCTTCAAACCCAACACCATCATCTCCACCGGAATCCACCGCCGACGACACCGAACCATTCCTCCTCCGAACTCGCCGTTCCCTCCACCGCACACCACCACTCCGTACCGCTTCTCGTTTCATCCGTCAAGCAAGCTCACATCATTTGATGCTGAATGAACCATCCGTACGTGTTCGAGAGAGAGCGGCAGTTGAGGTGGAAGAGCGGCAGAGGGAATGGGCTTATTCGAAACCAGTTGTAGCACTTGACATAGCTTGGAACTTGTCGTTTCTTGTTGTTAGTGTTGTCGTTTTGGGTTTGAGTAATAAAGAGGAACCTTGTGTTCCTCTTAGGGTGTGGATTTTGGGGTACTTGTTGCAAGGATTGGTTCATTCGTTGTGTGTTTTTTCGGAATTTAGAAGAAGGAGAAGGGATATTGTTCTAGAAGATTCTTCTCATGATTTAGAGACTGGTCCAAGGTGGAGTTTGAGTTCTGATACTGATTCTGATGTTGATTTTCATTCTCATCACTTTTTGGAGAATCAGGAAAATAGTATCATGAAGCACATAGAGTCTGCAAATACCATTCTATCATTCATATGGTGGGTTCTTGGGTTCTACTGGGTAACCGCTGGTGGTCAGAGTTTGACAAAGGATTCACCGCAGCTTTACTGGCTCTGTATCACATTTCTTGCTTTCGACGTTGTGATTGTAGTGATTTGTGTTGCTGTTGCATGTCTCATTGGAATTGCTGTTTGCTGTTGTCTTCCATGCATACTTGCGATTTTGTATGCAGTGGCAGATCAGGAAGGGGCAACGAAGGAAGAGATTGACCAGTTGCCAAAATATAGGTTCCGAATGATAAAGGAGTTTAAGCAAGAAGACGATACCGAAGAATCATCCAGAGGAGTGATGACAGAATGCGACACTGACAGCGATCCAGCGTCTGAGCATGTCATTGCCTTAGAAGATGCAGAATGCTGTATCTGCCTTTCTGCCTATGACGACGGGGCTGAACTTAGGGAACTTCCTTGCAATCATCATTTTCATTGCACATGCATTGATAAATGGCTGCTAATCAACGCTACCTGTCCTCTCTGCAAATTTAACATTTTGAGCACCGATAACCTCCATGAAGAAGTTTGA 1134 0.4462 MNSSSNPTPSSPPESTADDTEPFLLRTRRSLHRTPPLRTASRFIRQASSHHLMLNEPSVRVRERAAVEVEERQREWAYSKPVVALDIAWNLSFLVVSVVVLGLSNKEEPCVPLRVWILGYLLQGLVHSLCVFSEFRRRRRDIVLEDSSHDLETGPRWSLSSDTDSDVDFHSHHFLENQENSIMKHIESANTILSFIWWVLGFYWVTAGGQSLTKDSPQLYWLCITFLAFDVVIVVICVAVACLIGIAVCCCLPCILAILYAVADQEGATKEEIDQLPKYRFRMIKEFKQEDDTEESSRGVMTECDTDSDPASEHVIALEDAECCICLSAYDDGAELRELPCNHHFHCTCIDKWLLINATCPLCKFNILSTDNLHEEV 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01988 377 MobiDBLite consensus disorder prediction 1 21 - -
Trre13g01988 377 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 301 370 IPR013083 -
Trre13g01988 377 SMART ring_2 323 363 IPR001841 -
Trre13g01988 377 MobiDBLite consensus disorder prediction 1 17 - -
Trre13g01988 377 SUPERFAMILY RING/U-box 313 370 - -
Trre13g01988 377 PANTHER TARGET OF ERK KINASE MPK-1 51 370 - -
Trre13g01988 377 Pfam Ring finger domain 322 364 IPR001841 -
Trre13g01988 377 ProSiteProfiles Zinc finger RING-type profile. 323 364 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01988 Trre-Chr13 17211902 17216963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01988 10 371 C3H Transcription Factor Family AT1G68070 47.107 1.17e-112 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01988 - - tpra:123891576 631.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g01988 13 17211902 17216963 Trre13g01988 13 17211902 17216963 ECH