Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01986 ATGCCTCATGGGATGCTTGAAGTTATTCTTATAAGTGCAAAAGGTCTTCATAAAAGCGATTTCCTCAAGAAAATAGATCCTTATGTGATCCTCACTTATCGATCAAAGGAGCATAGAAGCAGTGTTGCTAAAGGACCTAATCCTAATTGGAGTGAGAGCTTCCTTTTCACAATTTCAGTTCATCTGAGACTAATGGATGAAGATGCATATACTAAGGATGACTTCATTGGTGAGACAATAATTGATTTAGAACCAGTGTTTGATGAAGGGAGCATAGCAAAAACTTCTTACAATGTTGTGAAGGAGCAGAACTACTGTGGAGAGATTAAGGTGGCTCTCACTTTTAGGCCAGAGTCTAGTCTAGTATTAAAAGACATTCTCCTGAATACAAAGCCACAAGAGCCGCCGCCTAACCCTATGATCCAAACTCCTCCCTTTCAACATGTAGGGGTTGCTGTAGATGGTGCGACGAGTGGCTTCGGACACTCCGCATCATCACCTTCATCTCAGCCAGTTTCTTAG 522 0.4176 MPHGMLEVILISAKGLHKSDFLKKIDPYVILTYRSKEHRSSVAKGPNPNWSESFLFTISVHLRLMDEDAYTKDDFIGETIIDLEPVFDEGSIAKTSYNVVKEQNYCGEIKVALTFRPESSLVLKDILLNTKPQEPPPNPMIQTPPFQHVGVAVDGATSGFGHSASSPSSQPVS 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01986 173 SMART C2_3c 5 95 IPR000008 -
Trre13g01986 173 ProSiteProfiles C2 domain profile. 1 105 IPR000008 -
Trre13g01986 173 MobiDBLite consensus disorder prediction 152 173 - -
Trre13g01986 173 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1 118 IPR035892 -
Trre13g01986 173 MobiDBLite consensus disorder prediction 159 173 - -
Trre13g01986 173 PANTHER C2 DOMAIN-CONTAINING 1 117 - -
Trre13g01986 173 Pfam C2 domain 5 97 IPR000008 -
Trre13g01986 173 Gene3D C2 domain 2 118 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01986 Trre-Chr13 17201947 17203608 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01986 4 129 C2H2 Transcription Factor Family AT4G21160 25.758 7.69e-11 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01986 - - gmx:100814819 162.54