Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01983 ATGGATAATAACTATGGTTCATCATCTTCTCCATATCGGTATCCAAACCCTTATATGTATCCACCTAACCCTAACCCTAACCCTAATCCTCATCAACCATATCCACCTCAAGATCCATATGCACATTCACATTCACATTCACATTCACATTCACATTCACATGCTCCTCCTTATCCATATCCTTACATTTCTTCACATTCATTCAACTATTCCTATCCTAGACCATACCCTCCTCCTCCTCAATTAGTACCCTCAGCCATACCCTCTTATCCTTATCCTCCATATCATGTTCCTCAAGGAACTCATAATCCTACTCAACCTTCCCATTCACACCATGCTAGCTTATTACAACATGGATCATCCTCTCATCATTATTATTATCAACAAAATGCGACTTCTCATGAAGATCGTCCCGATGCTCATTCGCGTCATAATAGCTTCTCTGGTCCTTACTGGCATGATACATCAAGTTCAGCAGTTGGTGGTGGTGGTGGTGGTGGTGGAGTATCACAAACTAGTGGTGGTGTTGGTGGTGGTGATAATTCCAGGCCTTCTGCTTATCCGCGTTTGGATGATCTAATGAACAATGTTAGTTTGTCTGATAATCAGGCAACTTCTCCACCTGTTGCAGCTCAACCTTTTATGCATTCGATATCGGTACCGAAGATGCAACAGAAGAAGGAGGATTTTTATGGATATTCGAATAACTCGTTCTCGGGTTATGGGTCCTCGTACCCGAATCGGGTTAACTCGGGTAGATTTTCGGATTTTTCTGGTTCGTTTAATGACTCGATGTATAATCAGAGTTTGCAGGTTGTTCCAGTGCAAAATAAAGGGTCATTGAGAGTTTTGCTCCTTCATGGAAATTTAGATATATGGGTTCATGAAGCCAAAAATCTTCCGAATATGGACATGTTCCACAAAACATTGGGGGATATGTTCGGTAAATTACCTGGTAGTGTGAGCAATAAAATTGAAGGAACAATGCATAAGAAGATTACCAGTGATCCTTATGTTTCGATTTCAGTGTCAAATGCCGTAATTGGGAGGACTTTTGTCATTAGCAACTCTGAAAATCCTGTTTGGAGTCAACATTTTTATGTTCCTGTTGCACATTACGCCGCTGAAGTGCACTTTGTTGTTAAAGACAGTGATGTTGTTGGTTCACAGCTCATTGGTATTGTAGCGATTCCAGTGGAACAAATATACTCCGGGGAAATAGTTGAAGGAGCTTACCCTGTCCTGAATAGTAATGGGAAACCTTGTAAGCAAGGTGCTGTACTGAGCCTATCCATTCAGTACATCCCAATGGAGAAACTAAGCTTTTATCATCAAGGAGTTGGAGCAGGGCCTGAATATATCGGAGTTCCTGCCACTTATTTTCCTTTGAGGAAAGGTGGAAATGTTACTCTATATCAAGATGCTCATGTTCCAGATGGAAGCCTCCCTAATGTGTTGCTTGATAGTGGGATGTTTTATGTGCATGGAAAGTGTTGGCATGACATCTTTGATGCGATAAGTCAAGCTCGCCGCTTGATTTATATTACAGGTTGGTCGGTGTGGCACAAAGTTAGGTTGGTAAGAGATGGCGGTTATGCATCAGATTATACCTTGGGTGATCTTCTGAAGACAAAGTCACAAGAAGGAGTAAGAGTGCTTCTCCTTATTTGGGATGATCCAACATCAAGAAGTATTTTGGGTTATAAAACAGATGGTGTCATGGCAACTCATGATGAGGAAACTAGACGGTTTTTCAAGCACTCGTCAGTCCATGTACTGCTTTGTCCCCGCATTGCTGGAAAACGACATAGCTGGATCAAGCAAAGGGAAGTTGGAACTATATACACACATCATCAGAAAACTGTAATTGTCGACGGGGATGCTGGAAATAACAGAAGGAAAATTATAGCGTTTGTTGGTGGACTTGATTTATGTGATGGGCGATATGATACTCCTCACCACCCTCTCTTTAAGACATTACAGACAATACATAAGGATGATTATCACAACCCCACTTTCACGGGTAACACTGGTGGTTGTCCAAGGGAGCCGTGGCATGATTTGCATTCTAAAATTGATGGTCCAGCAGCATATGATGTCTTAACGAACTTTGAGGAGCGCTGGTTAAAAGCTTCAAAACCGCATGGGATAAAGAAGTTGAAAATTTCATATGATGACGCTTTACTTAGACTGGAAAGAATTCCAGATGTTATTGGCATTAATGACACTCCTAGTGGTGACGATGATCCTGAATCATGGCATGTTCAGATATTTCGTTCAATTGATTCAAGTTCTGTTAAGAGATTTCCAAAAGATCCAAGAGAGGCAACTGGCAAGAACCTTGTATGTGGAAAGAATGTGCTGATTGACATGAGCATACATACAGCATACGTGAAGGCTATTCGTGCTGCACAGCATTACATTTATATCGAGAATCAATATTTCATCGGCTCTTCTTACAATTGGAGTCAACATAAAGACCTTGGTGCTAATAATTTAATACCGATGGAAATTGCTCTAAAGATTGTGGAAAAGATTAAAGCAAATGAGAGGTTTGCAGTGTATATAGTTATTCCAATGTGGCCAGAAGGTGTTCCAACAGGTGCTGCCACACAAAGGATTCTCTTCTGGCAGAATAAAACAATGCAAATGATGTATGAGACAATTTACAAGGCTTTGGTTGAGGCTGGGCTTGAAGCAGCATTCTCTCCTCAAGACTATTTGAACTTTTTCTGTCTTGGTAATCGGGAGGCCATAAATCTGTACGAAAATGTCAATGTGTCAGGGAATCCTCCCCAAGCAAATACTCCACAAGCAAATAGCCGAAATAGCCGACGTTTCATGATTTATGTTCATTCAAAAGGCATGATAGTTGATGATGAATATGTGATCGTGGGATCTGCAAACATTAACCAACGGTCTATGGAAGGAACAAGAGACAGTGAGATTGCTATGGGAGCATACCAACCTCATCATACCTGGGCAAGAAAACAGTCTTGTCCACATGGACAAATACATGGATATAGGATGTCACTTTGGGCAGAACATACTGGAACAATTGATGACTGCTTCTTGCAACCTGAGAGCCTTGAATGCGTGCGAAGGGTTAGAGCAATTGGTGAAATGAACTGGAAACAATTTGCAGAAAATGAAGTAACAGAGATGAGAGGGCATCTACTAAAATACCCTGTAGATGTAGATCGAAAGGGGAAAGTCAGATCACTTCCCGGTCATGAAGAGTTCCCTGATGTAGGAGGAAAAATTGTTGGATCTTTTCTTGCCATGAAGGAGAATCTTACCATTTGA 3306 0.4117 MDNNYGSSSSPYRYPNPYMYPPNPNPNPNPHQPYPPQDPYAHSHSHSHSHSHSHAPPYPYPYISSHSFNYSYPRPYPPPPQLVPSAIPSYPYPPYHVPQGTHNPTQPSHSHHASLLQHGSSSHHYYYQQNATSHEDRPDAHSRHNSFSGPYWHDTSSSAVGGGGGGGGVSQTSGGVGGGDNSRPSAYPRLDDLMNNVSLSDNQATSPPVAAQPFMHSISVPKMQQKKEDFYGYSNNSFSGYGSSYPNRVNSGRFSDFSGSFNDSMYNQSLQVVPVQNKGSLRVLLLHGNLDIWVHEAKNLPNMDMFHKTLGDMFGKLPGSVSNKIEGTMHKKITSDPYVSISVSNAVIGRTFVISNSENPVWSQHFYVPVAHYAAEVHFVVKDSDVVGSQLIGIVAIPVEQIYSGEIVEGAYPVLNSNGKPCKQGAVLSLSIQYIPMEKLSFYHQGVGAGPEYIGVPATYFPLRKGGNVTLYQDAHVPDGSLPNVLLDSGMFYVHGKCWHDIFDAISQARRLIYITGWSVWHKVRLVRDGGYASDYTLGDLLKTKSQEGVRVLLLIWDDPTSRSILGYKTDGVMATHDEETRRFFKHSSVHVLLCPRIAGKRHSWIKQREVGTIYTHHQKTVIVDGDAGNNRRKIIAFVGGLDLCDGRYDTPHHPLFKTLQTIHKDDYHNPTFTGNTGGCPREPWHDLHSKIDGPAAYDVLTNFEERWLKASKPHGIKKLKISYDDALLRLERIPDVIGINDTPSGDDDPESWHVQIFRSIDSSSVKRFPKDPREATGKNLVCGKNVLIDMSIHTAYVKAIRAAQHYIYIENQYFIGSSYNWSQHKDLGANNLIPMEIALKIVEKIKANERFAVYIVIPMWPEGVPTGAATQRILFWQNKTMQMMYETIYKALVEAGLEAAFSPQDYLNFFCLGNREAINLYENVNVSGNPPQANTPQANSRNSRRFMIYVHSKGMIVDDEYVIVGSANINQRSMEGTRDSEIAMGAYQPHHTWARKQSCPHGQIHGYRMSLWAEHTGTIDDCFLQPESLECVRRVRAIGEMNWKQFAENEVTEMRGHLLKYPVDVDRKGKVRSLPGHEEFPDVGGKIVGSFLAMKENLTI 1101
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01983 1101 ProSiteProfiles C2 domain profile. 266 412 IPR000008 -
Trre13g01983 1101 Pfam C2 domain 288 414 IPR000008 -
Trre13g01983 1101 MobiDBLite consensus disorder prediction 101 115 - -
Trre13g01983 1101 Gene3D Endonuclease Chain A 493 727 - -
Trre13g01983 1101 FunFam Phospholipase D delta 489 727 - -
Trre13g01983 1101 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 286 436 IPR035892 -
Trre13g01983 1101 Gene3D C2 domain 283 424 IPR035892 -
Trre13g01983 1101 MobiDBLite consensus disorder prediction 15 37 - -
Trre13g01983 1101 Pfam Phospholipase D Active site motif 948 974 IPR001736 GO:0003824
Trre13g01983 1101 Pfam Phospholipase D Active site motif 614 648 IPR001736 GO:0003824
Trre13g01983 1101 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 947 974 IPR001736 GO:0003824
Trre13g01983 1101 SMART pld_4 947 974 IPR001736 GO:0003824
Trre13g01983 1101 SMART pld_4 613 648 IPR001736 GO:0003824
Trre13g01983 1101 FunFam Phospholipase D 760 993 - -
Trre13g01983 1101 FunFam Phospholipase D delta 283 430 - -
Trre13g01983 1101 SUPERFAMILY Phospholipase D/nuclease 491 713 - -
Trre13g01983 1101 Gene3D Endonuclease Chain A 759 997 - -
Trre13g01983 1101 CDD C2_plant_PLD 283 435 - -
Trre13g01983 1101 SMART C2_3c 289 411 IPR000008 -
Trre13g01983 1101 MobiDBLite consensus disorder prediction 1 58 - -
Trre13g01983 1101 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 613 648 IPR001736 GO:0003824
Trre13g01983 1101 PANTHER PHOSPHOLIPASE D 278 1092 IPR015679 -
Trre13g01983 1101 MobiDBLite consensus disorder prediction 130 185 - -
Trre13g01983 1101 SUPERFAMILY Phospholipase D/nuclease 793 1033 - -
Trre13g01983 1101 MobiDBLite consensus disorder prediction 93 115 - -
Trre13g01983 1101 Pfam Phospholipase D C terminal 1021 1091 IPR024632 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre13g01983 Trre-Chr13 17191566 17197244 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01983 172 1101 Phospholipase D Gene Family (Wang group) AT2G42010 73.800 0.0 1447
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01983 K01115 - gmx:100801286 1798.1