Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01982 ATGTGTTTATTTGCATTGGAACCTCAAAACATTTTTTCCTTGTCTTGTGCTAAGTCCAGCATAGGCACCATGATGTTTAGTTTTCTATTTCTAGCTCTTTTGGCGACAAATTCAATGGCTCTCGCGGCGCAACAAACATATATAGTACACATGGACAAAACCAAAATTGAAGCCTCAATTCATTCTCAAGACAGCACAAAACAATGGTCTGAATCAATCATTGATTTCATTTCTCAAGCTTCAAAAGAAGAAGAACAAGAAGAAGCTGAGATTTTATCACCTCAGCTTTTATATGTTTATCAAACCAACATGTTTGGTTTTGCAGCCACACTTTCTGAGAATCAACTTAAACACTTAAACCAAGTTGATGGTTTCCTTTCAGCTATACCTGATGAACTTTTAACCCTTCACACAACATACACACCACATTTTCTTGGCCTAACTAATGGAAAAGGACTTTGGAGTGCTCCAAATTTGGCCTCTGATGTTATCATCGGTGTCCTTGATTCCGGAATATGGCCGGAACACATCAGTTTCAAAGACTCCGGCTTTTCTCCAATACCTCCTAAATGGAAAGGTATTTGTGAAAACGGCACCAAATTCTCGTCCTCAAAATGTAACAAGAAACTCATTGGTGCAAGATACTATTTTAGAGGGTACGAAAAAGTCATTGGAAAAATCAACGAAACAACTGAATATCGTTCTGCTAGAGACTCTCAAGGTCATGGAACACACACTGCCTCGACTGCAGCCGGTAATGTGGTTCAAAAAGCAAGCATTTTTGGACTTGCTAAAGGTTCAGCAAGTGGAATGAGGTATACTTCAAGAATTGCGGCGTATAAAGTGTGTTGGCTTTCTGGCTGTGCAAATTCGGACGTATTAGCAGCAATGGACCAAGCAGTTTCTGACGGTGTCGATGTACTTTCACTCTCTTTAGGAAGTATTCCAAAACCATTTTTTAATGATAGTATTGCTATAGCTTCATTTGGAGCAACAAAAAACGGCGTTTTTGTTTCTTGCTCCGCAGGCAACTCAGGCCCTTTTGCATCAACAGTTGGAAATGGCTCGCCATGGATCATGACAGTTGCTGCCAGCTACATCGACAGAACTTTTCCAACAAAAGTCAAACTCGGAAACTCAAAAACTTTCGAAGGCACATCTTTGTACCAAGGTAAAAATCAAACAAACCAACAATTTCCACTTGTGTATGGTAAAACAGCAGGTAAAAAGAGAGAAGCAGTGTTTTGCACAAAAAACTCACTTGATAAAAAACTCGTTTTCGGAAAAATCGTTGTTTGCGAACGGGGTATCAATAGCAGAACAGAAAAAGGAGAGGAAGTGAAAAAATCAGGTGGATATGGAATGATACTACTTAACTCGGAAAATCAAGGCGAAGAGCTTCTTTCTGATGCACATGTTTTACCAGCTACTTCATTAGGTGCTTCAGCAGGTAAAATCATTAGAAGCTACATTAACACGGTTAAAAAACCAACAGCTTCATTTTCATTTCTCGGAACAAGATACGACCTTGCTTCGAATAACTCGGCTTCTGCTAACCCTTTTGCATTTGGTTCAGGACATGTTAATCCAGAAAGTGCTTCTGATCCTGGATTAGTCTATGATATTAACACTAATGACTATTTGAATTACTTTTGCAGCCTTAATTTTACTTCTTCAGAGATTACAATATTGACAAAAACCAACTTCAAATGTTCTAAGAAACCACTTTTCCAAATTGGTGACTTAAACTATCCTTCATTTTCTGTTTTGTTTAGTAGAACATTACATAATGTGACATACAAAAGAGTTGTTACAAATGTTGGGAAATCAAAAAGTGCTTATTATGATGTTAAAGTTGAACAACCTAATGGAGTTTTAGTTAATGTTGAACCAAGGATATTGAAGTTTGAAAAATTGGGTCAGAAATTAAGCTATAAAGTTACATTTTTAGCAGTTGGAAAAACAAGAGTTATTGGTACTTCATCATTTGGATCACTCATTTGGGTATCTGGCAAATATAAGGTTAGAAGTCCTATTGCAGTGACATGGCAATAG 2055 0.3752 MCLFALEPQNIFSLSCAKSSIGTMMFSFLFLALLATNSMALAAQQTYIVHMDKTKIEASIHSQDSTKQWSESIIDFISQASKEEEQEEAEILSPQLLYVYQTNMFGFAATLSENQLKHLNQVDGFLSAIPDELLTLHTTYTPHFLGLTNGKGLWSAPNLASDVIIGVLDSGIWPEHISFKDSGFSPIPPKWKGICENGTKFSSSKCNKKLIGARYYFRGYEKVIGKINETTEYRSARDSQGHGTHTASTAAGNVVQKASIFGLAKGSASGMRYTSRIAAYKVCWLSGCANSDVLAAMDQAVSDGVDVLSLSLGSIPKPFFNDSIAIASFGATKNGVFVSCSAGNSGPFASTVGNGSPWIMTVAASYIDRTFPTKVKLGNSKTFEGTSLYQGKNQTNQQFPLVYGKTAGKKREAVFCTKNSLDKKLVFGKIVVCERGINSRTEKGEEVKKSGGYGMILLNSENQGEELLSDAHVLPATSLGASAGKIIRSYINTVKKPTASFSFLGTRYDLASNNSASANPFAFGSGHVNPESASDPGLVYDINTNDYLNYFCSLNFTSSEITILTKTNFKCSKKPLFQIGDLNYPSFSVLFSRTLHNVTYKRVVTNVGKSKSAYYDVKVEQPNGVLVNVEPRILKFEKLGQKLSYKVTFLAVGKTRVIGTSSFGSLIWVSGKYKVRSPIAVTWQ 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01982 684 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 165 176 IPR023827 -
Trre13g01982 684 Gene3D - 368 503 - -
Trre13g01982 684 CDD Peptidases_S8_3 134 365 IPR034197 -
Trre13g01982 684 Pfam Peptidase inhibitor I9 46 137 IPR010259 -
Trre13g01982 684 SUPERFAMILY Subtilisin-like 136 406 IPR036852 GO:0004252|GO:0006508
Trre13g01982 684 CDD PA_subtilisin_like 375 500 - -
Trre13g01982 684 ProSiteProfiles Serine proteases, subtilase domain profile. 142 464 - -
Trre13g01982 684 Pfam PA domain 400 486 IPR003137 -
Trre13g01982 684 PRINTS Subtilisin serine protease family (S8) signature 238 251 IPR015500 -
Trre13g01982 684 PRINTS Subtilisin serine protease family (S8) signature 160 179 IPR015500 -
Trre13g01982 684 Pfam Fibronectin type-III domain 581 681 IPR041469 -
Trre13g01982 684 Gene3D - 551 683 - -
Trre13g01982 684 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 47 509 IPR045051 -
Trre13g01982 684 FunFam Subtilisin-like protease SBT1.5 551 684 - -
Trre13g01982 684 Pfam Subtilase family 161 399 IPR000209 GO:0006508|GO:0008236
Trre13g01982 684 Gene3D Peptidase S8/S53 domain 162 367 IPR036852 GO:0004252|GO:0006508
Trre13g01982 684 Gene3D Peptidase S8/S53 domain 513 547 IPR036852 GO:0004252|GO:0006508
Trre13g01982 684 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 34 137 IPR037045 -
Trre13g01982 684 FunFam subtilisin-like protease SBT1.5 368 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01982 Trre-Chr13 17186159 17189129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01982 527 684 Subtilisin-like Serine Gene Family AT1G01900 53.416 7.41e-42 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01982 - - lja:Lj0g3v0335989.1 783.097