Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01981 ATGTCACTACTAAAAATGGTTTTACAAAAACTCACCAAATCCTTTCCTTTTCTTTGCCTTCAATTACTTCTCATCTTCATAAACATTGCTTCTTCAGTTAATGGAGTTGAACAAAAGAATTTTTACATTGTTTTCTTGGGAGATCATACTGTAAGCAAAGACATCAAACTTAAGACTCATTTGAATGTTCTATCTTCTGTGAAGGGGAGCTATGATGAAGCCAAAGAATCCATTGTATATAGCTACACAAAGAGCTTCAATGCATTTGCTGCAAAACTATCTGAAGATGAAGCCAATAAGTTATCTGCCATGGATGAAGTGCTTTTGGTGTTTAAAAATCGGTATCGTAAATTACACACAACAAGATCATGGAACTTCATTGGTTTACCTCTGACTGCTAAGAGAAGATTGAAATTTGAACGTGACATAGTTGTTGCTCTTTTGGACACAGGGATCACGCCGGAGTCGAAAAGCTTCAAGGATGATGGGTTAGGTCCTCCACCAGCAAGATGGAAAGGAGCTTGTGGTCACTATGCTAATTTCTCAGGCTGCAACAACAAGATCATAGGAGCCAAATACTTCAAGGCTGATGGAAACCCTGATCCATCCGACATATTATCGCCGATAGACGTTGACGGTCATGGAACTCATACAGCATCAACAGCTGCAGGAGATTTAGTACCAAATGCAAGTCTCTTTGGATTGGCCAACGGAACTTCACGTGGCGCCGTGCCATCGGCTAGGTTGGCAATTTACAAAGTCTGCTGGTCATCAACTGGATGTGCAGACATGGACATACTTGCTGGATTTGAAGCTGCTATACATGATGGTGTGGATGTCATATCAATTTCCATTGGTGGAGGAAGTCCTGATTATGCTCATGACTCTATATCAATTGGTTCATTCCATGCCATGATGAAAGGTATAACCACTGTTGCATCAGCTGGAAATGATGGTCCGAGTATGGCAAGCGTTACAAATACCGCACCGTGGATTGTCACAGTAGCTGCTAGTGGCATTGACAGAGCATTCAAGAGCACTGTTCAGTTAGGAAGTGGAAAAAATATTTCTGGTGTAGGAATTAGCTGTTTCAATCCAAAACAAAAACAGTACCCTATTATTAATGCGATTGATGCCGCAAAAGACTCGAAAAGCAAGGAAGATGCTAAATTCTGCAACTCAGGGTCTTTACAGGCAAATAAAGTGAAGGGAAAGGTTGTTTACTGCTTAGGATCATGGGGCACAGAAGCTACAGTTAAAGAAATCGGAGGCGTTGGTACTGTAATAGAATATGACAATTATCCTGATGTTGCTCAAATTTCCATTGCTCCTGCTACTGTTGTTAATCATAGCATAGGTGAAACTGTTACCAATTATATCAAATCTACAAGATCACCATCAGCAGTGATATACAAGAGCCATGAAGAAAAAGTTCCAGCTCCATTTGCGGCTACATTCTCATCTAGAGGACCAAATCCAGGATCGAAAAATGTACTCAAGCCTGACATTGCAGCTCCTGGAATCGACATCTTGGCATCTTATACTCTTAGGAAATCACTCACCGGCTTGGATGGTGATACGCAATTTTCAGAATTTTCTCTAATATCTGGAACTTCCATGGCATGTCCTCATGTTGCTGGCGTAGCAGCATATGTGAAATCATTTCATCCCAATTGGACCCCTGCTGCAATCAGATCAGCAATTATCACCACTGCCAAACCAATGAGCAGAAGAATTAACAATGAAGCCGAATTTGCCTATGGTTCTGGTCAACTAAACCCAAGAAAAGCTCTAAATCCCGGTTTAATCTATGACATGGATGAATTTGGTTATATCCAATTTTTATGCCATGAAGGTTACAAAAGTTCAAGATTATCAGCACTAGTTGGTTCACCTATAAACTGTTCCACTTTACTTCCTGGATTTGGACATGATGCTATCAACTATCCAACCATACAACTTAGCTTGGAAAGCAAGAAAGACATAAAAATCGGCATTTTTCGAAGAACAGTTACAAATGTAGGTCCTGTTCCAGTTATATATAATGCTACTATTAGATCACCAAAAGGAGTTGAAATTATAGTGAAGCCAAGTACACTTTGTTTTGATAGAAAAATGCAAAAGAGAAGCTTTGAAGTAGTTGTGAAAGTTAAATCTATTGTAAGTATGGAGATTCTATCTGGTTCACTTATATGGAGAAGTCCACGTTACATTGTTAGGAGTCCTATAGTTATTTACAAGCCATAA 2247 0.3956 MSLLKMVLQKLTKSFPFLCLQLLLIFINIASSVNGVEQKNFYIVFLGDHTVSKDIKLKTHLNVLSSVKGSYDEAKESIVYSYTKSFNAFAAKLSEDEANKLSAMDEVLLVFKNRYRKLHTTRSWNFIGLPLTAKRRLKFERDIVVALLDTGITPESKSFKDDGLGPPPARWKGACGHYANFSGCNNKIIGAKYFKADGNPDPSDILSPIDVDGHGTHTASTAAGDLVPNASLFGLANGTSRGAVPSARLAIYKVCWSSTGCADMDILAGFEAAIHDGVDVISISIGGGSPDYAHDSISIGSFHAMMKGITTVASAGNDGPSMASVTNTAPWIVTVAASGIDRAFKSTVQLGSGKNISGVGISCFNPKQKQYPIINAIDAAKDSKSKEDAKFCNSGSLQANKVKGKVVYCLGSWGTEATVKEIGGVGTVIEYDNYPDVAQISIAPATVVNHSIGETVTNYIKSTRSPSAVIYKSHEEKVPAPFAATFSSRGPNPGSKNVLKPDIAAPGIDILASYTLRKSLTGLDGDTQFSEFSLISGTSMACPHVAGVAAYVKSFHPNWTPAAIRSAIITTAKPMSRRINNEAEFAYGSGQLNPRKALNPGLIYDMDEFGYIQFLCHEGYKSSRLSALVGSPINCSTLLPGFGHDAINYPTIQLSLESKKDIKIGIFRRTVTNVGPVPVIYNATIRSPKGVEIIVKPSTLCFDRKMQKRSFEVVVKVKSIVSMEILSGSLIWRSPRYIVRSPIVIYKP 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01981 748 Pfam Fibronectin type-III domain 647 745 IPR041469 -
Trre13g01981 748 PRINTS Subtilisin serine protease family (S8) signature 536 552 IPR015500 -
Trre13g01981 748 PRINTS Subtilisin serine protease family (S8) signature 210 223 IPR015500 -
Trre13g01981 748 PRINTS Subtilisin serine protease family (S8) signature 140 159 IPR015500 -
Trre13g01981 748 Pfam Peptidase inhibitor I9 42 119 IPR010259 -
Trre13g01981 748 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 28 119 IPR037045 -
Trre13g01981 748 Gene3D - 341 476 - -
Trre13g01981 748 FunFam Subtilisin-like protease SBT1.5 142 399 - -
Trre13g01981 748 CDD Peptidases_S8_3 117 572 IPR034197 -
Trre13g01981 748 ProSitePatterns Serine proteases, subtilase family, serine active site. 537 547 IPR023828 -
Trre13g01981 748 Gene3D - 615 747 - -
Trre13g01981 748 ProSiteProfiles Serine proteases, subtilase domain profile. 123 598 - -
Trre13g01981 748 SUPERFAMILY Subtilisin-like 118 602 IPR036852 GO:0004252|GO:0006508
Trre13g01981 748 CDD PA_subtilisin_like 347 470 - -
Trre13g01981 748 Pfam Subtilase family 141 589 IPR000209 GO:0006508|GO:0008236
Trre13g01981 748 Gene3D Peptidase S8/S53 domain 142 608 IPR036852 GO:0004252|GO:0006508
Trre13g01981 748 FunFam Subtilisin-like protease SBT5.3 31 119 - -
Trre13g01981 748 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 73 744 IPR045051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01981 Trre-Chr13 17169226 17173360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01981 31 586 Subtilisin-like Serine Gene Family AT4G00230 65.530 0.0 742
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01981 - - gmx:100795950 1187.56