Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01979 ATGAAGCAGGAAACAGCAAGTTTGATGAAGAAGATTGAACTTCTTGAAGCTTCGAAACGGAAACTCATGGGAGAAGGTCTGGGGTCATGCTCCATGGAAGAGCTACAACAGATAGAACAACAGTTGGAAAAGAGTGTAAGCGTTGTTCGAGCAAGAAAGAATCAGGTTTACAAGAATCAAATTGAGCAACTAAAAGAAAAGGAAAAAACCCTACTTGCTGAAAATTCCAGGCTCTCTAAGCAGCCACAAGCACCACCACAACCACAGGCAGAAGCAGCAGCAAAAGATCATCAGAGAGAAAATCAACCTTATGCTGAAAGCAGTCCAAGCTCAGATGTGGTGACTGAATTGTTCATTGGACTACATAGGTCTAATTGA 378 0.4206 MKQETASLMKKIELLEASKRKLMGEGLGSCSMEELQQIEQQLEKSVSVVRARKNQVYKNQIEQLKEKEKTLLAENSRLSKQPQAPPQPQAEAAAKDHQRENQPYAESSPSSDVVTELFIGLHRSN 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01979 125 MobiDBLite consensus disorder prediction 72 112 - -
Trre13g01979 125 Coils Coil 54 81 - -
Trre13g01979 125 Pfam K-box region 1 81 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre13g01979 125 ProSiteProfiles K-box domain profile. 1 88 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre13g01979 125 Coils Coil 32 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01979 Trre-Chr13 17117693 17118992 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01979 1 69 MADS-box Gene Family AT2G45660 73.913 1.35e-29 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01979 - - gmx:100037477 164.466