Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01978 ATGCAGGACACAATTGAACGCTACCGCAGGAATACAAGAAGTGCTCAACCAATACAAAGATCAGATGAACAAAACATGCAGAATATGAAGCAGGAAACAGCAAGTTTGATGAAGAAGATTGAACTTCTTGAAGCTTCGAAACGGAAACTCATGGGAGAAGGTCTGGGGTCATGCTCCATGGAAGAGCTACAACAGATAGAACAACAGTTGGAAAAGAGTGTAAGCGTTGTTCGAGCAAGAAAGAATCAGGTTTACAAGAATCAAATTGAGCAACTAAAAGAAAAGGAAAAAACCCTACTTGCTGAAAATTCCAGGCTCTCTAAGCAGCCACAAGCACCACCACAACCACAGGCAGAAGCAGCAGCAAAAGATCATCAGAGAGAAAATCAACCTTATGCTGAAAGCAGTCCAAGCTCAGATGTGGTGACTGAATTGTTCATTGGACTACATAGGTCTAATTGA 462 0.4177 MQDTIERYRRNTRSAQPIQRSDEQNMQNMKQETASLMKKIELLEASKRKLMGEGLGSCSMEELQQIEQQLEKSVSVVRARKNQVYKNQIEQLKEKEKTLLAENSRLSKQPQAPPQPQAEAAAKDHQRENQPYAESSPSSDVVTELFIGLHRSN 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01978 153 MobiDBLite consensus disorder prediction 11 31 - -
Trre13g01978 153 MobiDBLite consensus disorder prediction 100 140 - -
Trre13g01978 153 MobiDBLite consensus disorder prediction 1 31 - -
Trre13g01978 153 Coils Coil 82 109 - -
Trre13g01978 153 ProSiteProfiles K-box domain profile. 26 116 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre13g01978 153 Pfam K-box region 22 109 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre13g01978 153 Coils Coil 26 46 - -
Trre13g01978 153 Coils Coil 60 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01978 Trre-Chr13 17117693 17123872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01978 1 97 MADS-box Gene Family AT2G45660 65.979 2.27e-39 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01978 - - gmx:100037477 208.764