Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01977 ATGGTTCTATGTGATGCTGAAATTGCCCTAATCATTTTCTCAAGCCGTGGCAAACTCTCTGAATTTGGAAGCTCAACTTCTGGCATTGGCAAAACCCTTGAACGATATCAGAGATGCTCTTTTACTTCTCAAAATGATAATGATAATGAACATGAAACTCAGAACTGGTACCAAGAGATGTCAAAGCTAAAGGCAAAGTATGAGTCACTTCAAAAGTCACAAAGGCAATTGCTAGGGGAAGATCTTGGACCACTTAACATAAAAGAGCTACAAAATCTTGAGAAGCAACTTGAAGGAGCTTTAGCACAAGCTAGGCAGAGGAAGACACAAATTATGATTGAACAAATGGAAGAGTTTAGGAAAAAGGAACTCCACCTTGGAGAAATAAATAAGCAACTTCGATTTAAGCTTGAATCAGATGGATTTAATCTGAAAGCATATGAAAGCATGTGGAACTCTACTAATTCTGCTACTGTTGCTGGAGGAAGCAACTTTCCTTTTCAGCATTCTGAAACCAATCCCATGGATTGCCAAGCTGAACCTTTCTTGCAAATAGGGTACCAAAACTATGTTCAAGCTGAACAATCAAGTGCTCCAAAGAACATGGTTGGTGAGAATAGCTTTATCCAAGGATGGATGCTTTGA 645 0.3891 MVLCDAEIALIIFSSRGKLSEFGSSTSGIGKTLERYQRCSFTSQNDNDNEHETQNWYQEMSKLKAKYESLQKSQRQLLGEDLGPLNIKELQNLEKQLEGALAQARQRKTQIMIEQMEEFRKKELHLGEINKQLRFKLESDGFNLKAYESMWNSTNSATVAGGSNFPFQHSETNPMDCQAEPFLQIGYQNYVQAEQSSAPKNMVGENSFIQGWML 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01977 214 ProSiteProfiles K-box domain profile. 53 143 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre13g01977 214 ProSiteProfiles MADS-box domain profile. 1 26 IPR002100 GO:0003677|GO:0046983
Trre13g01977 214 SUPERFAMILY SRF-like 2 58 IPR036879 GO:0003677|GO:0046983
Trre13g01977 214 Gene3D - 1 62 IPR036879 GO:0003677|GO:0046983
Trre13g01977 214 Coils Coil 87 110 - -
Trre13g01977 214 PANTHER SERUM RESPONSE FACTOR HOMOLOG 2 175 - -
Trre13g01977 214 Pfam K-box region 48 137 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre13g01977 214 Coils Coil 60 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01977 Trre-Chr13 17105950 17111654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01977 2 214 MADS-box Gene Family AT2G45650 56.621 4.82e-82 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Trre13g01977 K-box 6.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01977 K09264 - tcc:18614251 289.271