Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01954 ATGAGAACTGAGGGCTATGTTGCTTACCGTGTTCGTGTCAGGAGAGGTGGAAGAAAGAGGCCCGTTTCCAAGGGTATTGTTTATGGGAAACCAACAAACCAGGGAGTTACACAACTCAAGTTTCAGAGGAGCAAGAGGTCAGTCGCTGAGGAGCGTGCTGGACGTAAACTTGGTGGCCTCAGGGTTCTAAATTCATACTGGGTCAATGAGGATTCAACCTTCAAATATTTTGAGGTCATTTTGGTCGATGTTGCTCACAGTGCCATAAGAAATGACCCACGGATCAACTGGCTCACCAACCCCGTCCACAAACACAGGGAACTTCGTGGCCTCACTTCAGCTGGAAAAGAAAACAGAGGTTTGACTGGCAAGGGCCATCGTTACCACAAAGCTCGTCCATCCCGCAGGGCCAACTGGAAAAGAAACAACACCCTTTCTCTTCGTCGCTATCGTTGA 456 0.489 MRTEGYVAYRVRVRRGGRKRPVSKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTFKYFEVILVDVAHSAIRNDPRINWLTNPVHKHRELRGLTSAGKENRGLTGKGHRYHKARPSRRANWKRNNTLSLRRYR 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01954 151 Gene3D Ribosomal protein l15e 2 151 IPR024794 GO:0003735|GO:0005840
Trre13g01954 151 MobiDBLite consensus disorder prediction 109 151 - -
Trre13g01954 151 PANTHER RIBOSOMAL PROTEIN L15 4 151 IPR000439 GO:0003735|GO:0005840|GO:0006412
Trre13g01954 151 MobiDBLite consensus disorder prediction 123 137 - -
Trre13g01954 151 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 4 142 IPR012678 GO:0003735|GO:0005840|GO:0006412
Trre13g01954 151 FunFam Ribosomal protein L15 2 151 - -
Trre13g01954 151 SMART Ribosomal_L15e_2 1 140 IPR000439 GO:0003735|GO:0005840|GO:0006412
Trre13g01954 151 Pfam Ribosomal L15 3 138 IPR000439 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01954 Trre-Chr13 16735577 16737748 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01954 21 151 Cytoplasmic Ribosomal Protein Gene Family AT4G16720 84.733 2.27e-80 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01954 K02877 - gmx:100305473 267.7