Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01953 ATGGAGTTCCAAATAATTTTACTAGTGATTACCTTTGTAAGTGCAAGCATTCTCATCTTCATTCTTAGAAAATTAAACCAAACTAAAAAATCTTCAAAACTTCCACCAGGGCCATACCAATTTCCCATCATTGGAAACATCTTAGAACTTGGCAAAAATCCACACAAAACACTCACAAAACTCTCTCAAATCTATGGACCAATCATGACACTAAAACTAGGAACAGTAACAACCATAGTAATCTCATCACCACAACTAGCTAAACAAGTCTTACATGAAAATTCCCAAATCTTCTCTAATAGAACTGTCCCACATGCACTTTGTGCACTTGATCATGACAAAGTTTCAGTTGGATTGCTTCCAACATTAGCTTTGTGGAAGAAACTAAGAAAAATTTGTGCTACAAAATTATTTTCCACAAAAATGCTTGATTCAAGAAAAATCCTCCGCCAACAAAAGTTGCAAGAATTATTGGATTATGTGAATGAAAAATGCAACAAAGAAGAGGTTTTTGATATTGGTGAGGTTGTTTTTACAACTGTCCTTAATTCAATTTCAAACATTTTGTTCTCAATGGATTTGGCTCATTCCACACCTGATGAAAAGTCTCAAGAGTTTAAAAACATTATTTGGGGTTACATGGAAGAAGGTGGTAAGCCTAATATTTCAGATTTCTTTCCAATTCTGCGACCATTAGATCCACAAAGGATACAAGCAAGGATGGCCAATCATATTAAGAAGTTGTGTAAAATTTTTAATGGGATTATTGAAGAAAGAATTTGTTCACGAGATTCCAAAGCTGATTATGAGATGTGCAATGATGTGTTAGATTCACTCCTTAATGACAACAATCTTGGAGAAACCACTTCTGAATTGAGCCACAATGAAATGGCTCATCTATTTCTGGATTTATTTGTTGCTGGGGTTGACACTACAACAACCACTATTGAATGGATTATGGCGGAGCTACTACGTGACATGAAAACATTAACAAAAGCAAGAAAAGAATTATGTAAAGCCATTGGCAAAGGTGAAACAATTGAAGAATCACATATTTCTAAATTACCTTTCTTACAAGCAGTGGTGAAGGAAACATTGAGATTGCACCCACCTGCTCCATTATTGCTACCACACAAATGTGATAAAAATGTGAACATATCAGGCTTCAATGTGCCAAAAAAAGCACAAGTATTTGTCAATGTGTGGGCAATGGGAAAAGATCCAACCATTTGGAAAAATCCAAATTTATTCATGCCTGAAAGATTTTTGGAGTGTGATATTAATTATAAGGGAAATAATTTTGAGCTTATACCGTTTGGGGTTGGCAAAAGAATCTGTCCAGGATTGTCATTAGCTCATAGGACTGTGCATTTGATTGTAGCATCCCTTCTACGCAACTTTGGATGGACACTTGTTGATGGGCTAAAGCCAGATGACATGAATATGGATGAGCAATTTGGCTTAACTCTAAAGAGGCTCCAATATCTTCGAGTTCAAGCTACTTCATCACCATAG 1515 0.3564 MEFQIILLVITFVSASILIFILRKLNQTKKSSKLPPGPYQFPIIGNILELGKNPHKTLTKLSQIYGPIMTLKLGTVTTIVISSPQLAKQVLHENSQIFSNRTVPHALCALDHDKVSVGLLPTLALWKKLRKICATKLFSTKMLDSRKILRQQKLQELLDYVNEKCNKEEVFDIGEVVFTTVLNSISNILFSMDLAHSTPDEKSQEFKNIIWGYMEEGGKPNISDFFPILRPLDPQRIQARMANHIKKLCKIFNGIIEERICSRDSKADYEMCNDVLDSLLNDNNLGETTSELSHNEMAHLFLDLFVAGVDTTTTTIEWIMAELLRDMKTLTKARKELCKAIGKGETIEESHISKLPFLQAVVKETLRLHPPAPLLLPHKCDKNVNISGFNVPKKAQVFVNVWAMGKDPTIWKNPNLFMPERFLECDINYKGNNFELIPFGVGKRICPGLSLAHRTVHLIVASLLRNFGWTLVDGLKPDDMNMDEQFGLTLKRLQYLRVQATSSP 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01953 504 CDD CYP76-like 62 498 - -
Trre13g01953 504 Gene3D Cytochrome P450 20 503 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01953 504 PRINTS E-class P450 group I signature 316 342 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01953 504 PRINTS E-class P450 group I signature 180 198 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01953 504 PRINTS E-class P450 group I signature 359 377 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01953 504 PRINTS E-class P450 group I signature 86 107 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01953 504 PRINTS E-class P450 group I signature 436 446 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01953 504 PRINTS E-class P450 group I signature 62 81 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01953 504 PRINTS E-class P450 group I signature 400 424 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01953 504 PRINTS E-class P450 group I signature 446 469 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01953 504 PRINTS E-class P450 group I signature 296 313 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01953 504 FunFam Cytochrome P450 76C4 26 499 - -
Trre13g01953 504 SUPERFAMILY Cytochrome P450 35 499 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01953 504 Coils Coil 320 340 - -
Trre13g01953 504 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 439 448 IPR017972 GO:0005506|GO:0016705
Trre13g01953 504 Pfam Cytochrome P450 35 495 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01953 504 PRINTS P450 superfamily signature 437 446 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01953 504 PRINTS P450 superfamily signature 446 457 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01953 504 PRINTS P450 superfamily signature 307 324 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01953 504 PRINTS P450 superfamily signature 360 371 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01953 504 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 12 499 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01953 Trre-Chr13 16725226 16727755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01953 4 496 Cytochrome P450 AT2G45550 46.185 3.17e-159 460
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01953 - - cam:101504674 726.857