Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01952 ATGGGTGCTTACAAGTATGTTTCTGAGCTATGGCGGAAGAAGCAATCGGATGTTATGCGATTCATGCAGCGTGTGAGGTGTTGGGAGTATCGTCAACAACCTTCCATTGTTCGTCTCACTAGACCTACTCGTCCTGACAAGGCTCGCCGTTTGGGCTACAAAGCCAAACAGGGCTATGTTGCTTACCGTGTTCGTGTCAAGAGAGGTGGAAGAAAGAGGCCCGTTTCCAAGGGTATTGTTTATGGGAAACCAACAAACCAGGGAGTTACACAACTCAAGTTTCAGAGGAGCAAGAGGTCAGTCGCTGAGGAGCGTGCTGGACGTAAACTTGGTGGCCTCAGGGTTCTAAATTCATACTGGGTCAATGAGGATTCAACCTTCAAATATTTTGAGGTCATTTTGGTCGATGTTGCTCACAGTGCCATAAGAAATGACCCACGGATCAACTGGCTCACCAACCCCGTCCACAAACACAGGGAACTTCGTGGCCTCACTTCAGCTGGAAAAGAAAACAGAGGTTTGACTGGCAAGGGCCATCGTTACCACAAAGCTCGTCCATCCCGCAGGGCCAACTGGAAAAGAAACAACACCCTTTCTCTTCGTCGCTATCGTTGA 615 0.4894 MGAYKYVSELWRKKQSDVMRFMQRVRCWEYRQQPSIVRLTRPTRPDKARRLGYKAKQGYVAYRVRVKRGGRKRPVSKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTFKYFEVILVDVAHSAIRNDPRINWLTNPVHKHRELRGLTSAGKENRGLTGKGHRYHKARPSRRANWKRNNTLSLRRYR 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01952 204 MobiDBLite consensus disorder prediction 161 204 - -
Trre13g01952 204 MobiDBLite consensus disorder prediction 176 190 - -
Trre13g01952 204 SMART Ribosomal_L15e_2 2 193 IPR000439 GO:0003735|GO:0005840|GO:0006412
Trre13g01952 204 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 1 195 IPR012678 GO:0003735|GO:0005840|GO:0006412
Trre13g01952 204 Pfam Ribosomal L15 2 191 IPR000439 GO:0003735|GO:0005840|GO:0006412
Trre13g01952 204 PANTHER RIBOSOMAL PROTEIN L15 1 204 IPR000439 GO:0003735|GO:0005840|GO:0006412
Trre13g01952 204 FunFam Ribosomal protein L15 1 204 - -
Trre13g01952 204 Gene3D Ribosomal protein l15e 1 204 IPR024794 GO:0003735|GO:0005840
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01952 Trre-Chr13 16710381 16711882 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01952 1 204 Cytoplasmic Ribosomal Protein Gene Family AT4G16720 87.745 1.59e-123 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01952 K02877 - gmx:100798324 379.793