Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01951 ATGAGTTTCTTGCAGGGAATCATTGATTCCTTTAACTCTGTCTTCTCTCCACAATCCATCGATCAAAATTCTTCTTCTTCTTCATCAATGGAAGCTTCTCCTTCTTCGGTTTCCAACGAACGTGTCGCTTACAAGCTTAAAGGCTACTACGATTTAGCCACACAAGAGATCGATAAAGCTGTTAGGGCTGAAGAATGGGGATTAATCGATGACGCTATTCTTCACTACAGGAATGCCCATAGGATCCTTCTCGAAGCTAATTCAACTCCTGTTCCTTCCTTCATCACTCCAAGTGAGAAACAAAAGGTACAATCGTATCGTCAAAAGATATCAAAATGGCAGGGACAAGTGTCCGAGAGATTGCAGGCTCTCAATAGACGAGCAGGTAGCTCAGTTGCCAATCAGAGCACCTCAAACCTTGTTGCACCAACTGCTGCAGTTCCAACTAAACTATCAAATACTACAAAAAGAGTGTTACAAAAGAATCCTCAAAGAAAAGCTGAGGTGAATAAAGCTCAAAACCCGAAATCTAGTCAAACATCTGGTGAAAATTATGACACAAAACTGGTTGAAATGATTAACACTGCCATTGTAGATAGAAGTCCTTCTGTCCGGTGGGACGATGTTGGTGGCCTTGAAAAGGCAAAACAAGCTTTAATGGAGATGGTCATTTTGCCAACTAAGAGAAGAGACTTGTTCACTGGTCTTCGAAGGCCAGCTAGAGGCTTGCTTCTCTTTGGTCCGCCTGGCAATGGTAAGACCATGCTTGCCAAAGCAGTTGCTTCAGAATCAGAAGCAACATTTTTTAATGTCACGGCAGCTTCCTTGACGTCAAAATGGGTTGGTGAAGCTGAAAAGCTTGTACGGACACTATTCAAGGTAGCTACATCGAGACAGCCATCTGTAATTTTCATTGACGAGATTGATAGTATAATGTCAACAAGGACGACAAATGAAAACGAGGCCAGCAGACGATTAAAATCAGAATTCCTTATCCAGTTTGATGGGGTGACATCTAATCCTGATGATATCGTGATTGTAATTGGTGCGACCAATAAGCCACAGGAACTGGATGATGCAGTTCTCAGGAGACTGGTTAAGAGAATATACGTGCCTTTACCAAATGAAAATGTTCGGAAACTTCTGCTAAAACACAAACTCAAGGGTCAAGCATTCTCCTTACCTAGTAGAGATCTAGAGATGCTTGTAAAAGAGACTGAAGGATACTCTGGAAGTGATCTGCAAGCGTTGTGCGAAGAAGCTGCAATGATGCCAATTAGAGAGCTGGGTCCTAACATTCTTACTGTCAAGGCAAATCAGGTAAGAGGACTGAGGTATGACGACTTCAAGAAAGCAATGGCTGTGATCAGACCAAGTTTAAACAAAAGTAAATGGGAAGAGCTTGAGAAGTGGAATGAAGAATTTGGCTCAAATTGA 1437 0.4203 MSFLQGIIDSFNSVFSPQSIDQNSSSSSSMEASPSSVSNERVAYKLKGYYDLATQEIDKAVRAEEWGLIDDAILHYRNAHRILLEANSTPVPSFITPSEKQKVQSYRQKISKWQGQVSERLQALNRRAGSSVANQSTSNLVAPTAAVPTKLSNTTKRVLQKNPQRKAEVNKAQNPKSSQTSGENYDTKLVEMINTAIVDRSPSVRWDDVGGLEKAKQALMEMVILPTKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESEATFFNVTAASLTSKWVGEAEKLVRTLFKVATSRQPSVIFIDEIDSIMSTRTTNENEASRRLKSEFLIQFDGVTSNPDDIVIVIGATNKPQELDDAVLRRLVKRIYVPLPNENVRKLLLKHKLKGQAFSLPSRDLEMLVKETEGYSGSDLQALCEEAAMMPIRELGPNILTVKANQVRGLRYDDFKKAMAVIRPSLNKSKWEELEKWNEEFGSN 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01951 478 ProSitePatterns AAA-protein family signature. 345 364 IPR003960 GO:0005524|GO:0016887
Trre13g01951 478 Gene3D - 202 472 IPR027417 -
Trre13g01951 478 MobiDBLite consensus disorder prediction 128 185 - -
Trre13g01951 478 CDD RecA-like_spastin 208 371 - -
Trre13g01951 478 PANTHER AAA DOMAIN-CONTAINING 102 477 - -
Trre13g01951 478 Gene3D - 374 456 - -
Trre13g01951 478 Pfam Vps4 C terminal oligomerisation domain 444 476 IPR015415 -
Trre13g01951 478 CDD MIT_spastin 46 124 - -
Trre13g01951 478 Pfam ATPase family associated with various cellular activities (AAA) 243 373 IPR003959 GO:0005524|GO:0016887
Trre13g01951 478 SMART AAA_5 239 375 IPR003593 GO:0016887
Trre13g01951 478 Gene3D - 38 128 - -
Trre13g01951 478 FunFam AAA-type ATPase family protein 39 128 - -
Trre13g01951 478 SMART smart 46 123 IPR007330 -
Trre13g01951 478 Pfam AAA+ lid domain 398 429 IPR041569 -
Trre13g01951 478 FunFam Spastin, putative 202 386 - -
Trre13g01951 478 FunFam AAA-type ATPase family protein 374 456 - -
Trre13g01951 478 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 202 475 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01951 Trre-Chr13 16700467 16705119 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01951 183 428 Calmodulin-binding Proteins AT3G56690 41.569 4.88e-49 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01951 K13254 - gmx:100780946 785.793