Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01950 ATGAGTTTCTTGCAGGGAATCATTGATTCCTTTAACTCTGTCTTCTCTCCACAATCCATCGATCAAAATTCTTCTTCTTCTTCATCAATGGAAGCTTCTCCTTCTTCGGTTTCCAACGAACGTGTCGCTTACAAGCTTAAAGGCTACTACGATTTAGCCACACAAGAGATCGATAAAGCTGTTAGGGCTGAAGAATGGGGATTAATCGATGACGCTATTCTTCACTACAGGAATGCCCATAGGATCCTTCTCGAAGCTAATTCAACTCCTGTTCCTTCCTTCATCACTCCAAGTGAGAAACAAAAGGTACAATCGTATCGTCAAAAGATATCAAAATGGCAGGGACAAGTGTCCGAGAGATTGCAGGCTCTCAATAGACGAGCAGGTAGCTCAGTTGCCAATCAGAGCACCTCAAACCTTGTTGCACCAACTGCTGCAGTTCCAACTAAACTATCAAATACTACAAAAAGAGTGTTACAAAAGAATCCTCAAAGAAAAGCTGAGGTGAATAAAGCTCAAAACCCGAAATCTAGTCAAACATCTGGTGAAAATTATGACACAAAACTGGTTGAAATGATTAACACTGCCATTGTAGATAGAAGTCCTTCTGTCCGGTGGGACGATGTTGGTGGCCTTGAAAAGGCAAAACAAGCTTTAATGGAGATGGTCATTTTGCCAACTAAGAGAAGAGACTTGTTCACTGGTCTTCGAAGGCCAGCTAGAGGCTTGCTTCTCTTTGGTCCGCCTGGCAATGGTAAGACCATGCTTGCCAAAGCAGTTGCTTCAGAATCAGAAGCAACATTTTTTAATGTCACGGCAGCTTCCTTGACGTCAAAATGGGTTGGTGAAGCTGAAAAGCTTGTACGGACACTATTCAAGGTAGCTACATCGAGACAGCCATCTGTAATTTTCATTGACGAGATTGATAGTATAATGTCAACAAGGACGACAAATGAAAACGAGGCCAGCAGACGATTAAAATCAGAATTCCTTATCCAGTTTGATGGGGTGACATCTAATCCTGATGATATCGTGATTGTAATTGGTGCGACCAATAAGCCACAGGAACTGGATGATGCAGTTCTCAGGAGACTGGTTAAGAGAATATACGTGCCTTTACCAAATGAAAATGTTCGGAAACTTCTGCTAAAACACAAACTCAAGGGTCAAGCATTCTCCTTACCTAGTAGAGATCTAGAGATGCTTGTAAAAGAGACTGAAGGATACTCTGGAAGTGATCTGCAAGCGTTGTGCGAAGAAGCTGCAATGATGCCAATTAGAGAGCTGGGTCCTAACATTCTTACTGTAAGAGGACTGAGGTATGACGACTTCAAGAAAGCAATGGCTGTGATCAGACCAAGTTTAAACAAAAGTAAATGGGAAGAGCTTGAGAAGTGGAATGAAGAATTTGGCTCAAATTGA 1422 0.4198 MSFLQGIIDSFNSVFSPQSIDQNSSSSSSMEASPSSVSNERVAYKLKGYYDLATQEIDKAVRAEEWGLIDDAILHYRNAHRILLEANSTPVPSFITPSEKQKVQSYRQKISKWQGQVSERLQALNRRAGSSVANQSTSNLVAPTAAVPTKLSNTTKRVLQKNPQRKAEVNKAQNPKSSQTSGENYDTKLVEMINTAIVDRSPSVRWDDVGGLEKAKQALMEMVILPTKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESEATFFNVTAASLTSKWVGEAEKLVRTLFKVATSRQPSVIFIDEIDSIMSTRTTNENEASRRLKSEFLIQFDGVTSNPDDIVIVIGATNKPQELDDAVLRRLVKRIYVPLPNENVRKLLLKHKLKGQAFSLPSRDLEMLVKETEGYSGSDLQALCEEAAMMPIRELGPNILTVRGLRYDDFKKAMAVIRPSLNKSKWEELEKWNEEFGSN 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01950 473 ProSitePatterns AAA-protein family signature. 345 364 IPR003960 GO:0005524|GO:0016887
Trre13g01950 473 MobiDBLite consensus disorder prediction 128 185 - -
Trre13g01950 473 Pfam AAA+ lid domain 398 429 IPR041569 -
Trre13g01950 473 Pfam ATPase family associated with various cellular activities (AAA) 243 373 IPR003959 GO:0005524|GO:0016887
Trre13g01950 473 FunFam Spastin, putative 202 386 - -
Trre13g01950 473 CDD RecA-like_spastin 208 371 - -
Trre13g01950 473 CDD MIT_spastin 46 124 - -
Trre13g01950 473 Gene3D - 38 128 - -
Trre13g01950 473 FunFam AAA-type ATPase family protein 374 451 - -
Trre13g01950 473 SMART AAA_5 239 375 IPR003593 GO:0016887
Trre13g01950 473 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 202 470 IPR027417 -
Trre13g01950 473 PANTHER AAA DOMAIN-CONTAINING 102 472 - -
Trre13g01950 473 Gene3D - 202 467 IPR027417 -
Trre13g01950 473 SMART smart 46 123 IPR007330 -
Trre13g01950 473 FunFam AAA-type ATPase family protein 39 128 - -
Trre13g01950 473 Gene3D - 374 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01950 Trre-Chr13 16700467 16705119 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01950 183 454 Calmodulin-binding Proteins AT3G56690 39.502 2.01e-49 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01950 K13254 - gmx:100780946 770.385