Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01945 ATGACTTCATCTCAGGAAAAACGCCACCGTTCCATCTTCGAACTTCCATCTAACTACTTCCACTCTTCTCGTCTTCTCCCTTCTCCTCATTCATCACTTCCCAACCACCACAACGAAACTCTTCAACCGCCCTCAAACCACCACGTCGATGATATTCAAAACGCCGTCGTTTCGGGTCCTAGGCTGACATGCAATATCTGTAAGGCTCAGTTTGATTCCCTTCAAGACCAACGCTCTCACTTCAAATCGGATATTCATCGATTCAATGTGAAGCTGACAATTGCTGGTAAAAGTATTGTGAAGGAAGAGGATTTTGAGGATCTGACAACTGATTTTGTCAAAGACTGTGATGTGTCAAGTATATCTGGATCAGAAAGTGATGATGATGACAGTGAAAATGAGTTTCGAGGTCAAATTGAAGTGCGTGGTAAATCTTGTGAAAGCTTTAAACAAAAGCTATTCGTCTGTCTTCAGACAGGGCAGAGAGTTTCTTTATGGAAGTGTTTGATTATGAATGTGACTGAAAATGTGGTGTATGAGGATGAACAAGTGCAGAAAAGTTTGGTTGAGAGGTTGAAATCTCTAACTGTTGAACCCAGGGATAACACCCGGTTGAGGATTGTTCTGCTGGCATCCGGTGGGCACTTTGCGGGCTGTGTCTTTGATGGTGACACAGTTGTGGCTTCCAAGACATTTCACAGATATGTTGTGAGGGCCAAGGCTGGAAAAAAGCAGTCATCTAAAGATGCTTCTGGCAGGACTGTACATTCTGCTGGTGCTTCACTTCGCCGTTACAACGAACTTGCATTAAAAAAGGAAGTTCACGAACTGCTTGCTGCTTGGAGACCTTATTTTGATGCTTCTGTTTGCATTTTTATACACGCACCTTCAAGTAGTCGTCAACTTCTTTATGATGGAGAAAAGCCATGTTTTACCAATCCGCAATGTGTTAGAAATATTGCTATGATTGTCCGCAGGCCCACTCTAAGGGAAGCCAAGCGCATATATAGCCAGTTGACCCTAGTATCCTATGAAGCAGATGAGAAGGAAATTTTGCAAAGCAAAGAGCAGGATGTGGTGCCAACTCGTATTGCTAAAAGAAATGGCGTCCCACCTGTCAGCAAAGTGGACATGGCTGGGATGAATGAAAACGATAAAGCTGAAGTTTCTTCCAGTAACAAAAATGATGAACCTCTTATTTCAAGTAATGAGGAAAGTGAGAATGAGTTACCTGTTAAATCAACTCCTTTACATCAAGCAGCACAGTCTGGTGACTCTGAAAAGGTTATGGAACTTCTGGAACAGGGCTTGGATCCATGCATTAAAGATGAAAGGGGACGGACTCCATATATGTTGGCACCTGACAAGGAAGTCAGGAACACTTTCAGAAGGTTTATGGCTTCAAATCTTGACAAGTGGGATTGGAATGCTGCAAAAGTTCCGAGTGCATTGACAAAAGAATTGGAAGAATCACAAGCTGCTAAGCAGGCAGAAAAAGATGCCAAGAAAAAAGCTAGAGCAAAAGAATTAAAGAAATTACGTAAAGCAAAAGAAAAGAAGGCTCAGAGAAGCTGCTCTGCACATCCCACCTCCGCCGACCCTGCAACCGGTGACTCATCGTCCAGCAACCGGGAATCCAGCATCTGGCAACCAGCAGCCTGTTTCTGCTCTGTTTCCGGTGGCATATGTTTGGTCATTGTATGTGTCTGGGGCAAATGGATCATGGAGAGAGCTGAAGCTGCTGAAAAACAAAAGATTGCTTCGACATCTGCTACCGGACAATCTCAACCAAAAAGTGGTGTCAAATTATCAAAAGAGGAGGAAATGAAAAGAGCACAGGATGCAGAAAGAGAAAAGAGAGCAGCTGCTGCAGAGAGAAGAATGGCTGCCCTCAAAATTCAAGCTAGTAATTCAACCACTTCAGAGGCTAATAAAAGTGGATTAGCCGGCGACATATTATGTTCCTGTTGTAATTCATCACTTGCTGGTAAAGTTCCTTTCCACCGGTATAATTACAAATACTGCAGCACTTCATGCATGCATGTACACAAAGAGATCCTTGAAGATGGATGA 2073 0.4322 MTSSQEKRHRSIFELPSNYFHSSRLLPSPHSSLPNHHNETLQPPSNHHVDDIQNAVVSGPRLTCNICKAQFDSLQDQRSHFKSDIHRFNVKLTIAGKSIVKEEDFEDLTTDFVKDCDVSSISGSESDDDDSENEFRGQIEVRGKSCESFKQKLFVCLQTGQRVSLWKCLIMNVTENVVYEDEQVQKSLVERLKSLTVEPRDNTRLRIVLLASGGHFAGCVFDGDTVVASKTFHRYVVRAKAGKKQSSKDASGRTVHSAGASLRRYNELALKKEVHELLAAWRPYFDASVCIFIHAPSSSRQLLYDGEKPCFTNPQCVRNIAMIVRRPTLREAKRIYSQLTLVSYEADEKEILQSKEQDVVPTRIAKRNGVPPVSKVDMAGMNENDKAEVSSSNKNDEPLISSNEESENELPVKSTPLHQAAQSGDSEKVMELLEQGLDPCIKDERGRTPYMLAPDKEVRNTFRRFMASNLDKWDWNAAKVPSALTKELEESQAAKQAEKDAKKKARAKELKKLRKAKEKKAQRSCSAHPTSADPATGDSSSSNRESSIWQPAACFCSVSGGICLVIVCVWGKWIMERAEAAEKQKIASTSATGQSQPKSGVKLSKEEEMKRAQDAEREKRAAAAERRMAALKIQASNSTTSEANKSGLAGDILCSCCNSSLAGKVPFHRYNYKYCSTSCMHVHKEILEDG 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01945 690 ProSiteProfiles Ankyrin repeat region circular profile. 412 444 - -
Trre13g01945 690 Pfam Bacteroidetes VLRF1 release factor 207 344 IPR041175 -
Trre13g01945 690 MobiDBLite consensus disorder prediction 385 422 - -
Trre13g01945 690 Gene3D - 375 520 IPR036770 -
Trre13g01945 690 Pfam Vms1-associating treble clef domain 654 685 IPR041540 -
Trre13g01945 690 Coils Coil 488 519 - -
Trre13g01945 690 ProSiteProfiles Ankyrin repeat profile. 412 444 IPR002110 GO:0005515
Trre13g01945 690 ProSitePatterns Zinc finger C2H2 type domain signature. 64 86 IPR013087 -
Trre13g01945 690 Coils Coil 605 632 - -
Trre13g01945 690 MobiDBLite consensus disorder prediction 586 600 - -
Trre13g01945 690 MobiDBLite consensus disorder prediction 363 427 - -
Trre13g01945 690 MobiDBLite consensus disorder prediction 512 544 - -
Trre13g01945 690 SUPERFAMILY Ankyrin repeat 414 467 IPR036770 -
Trre13g01945 690 MobiDBLite consensus disorder prediction 525 544 - -
Trre13g01945 690 PANTHER ANKYRIN REPEAT AND ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 2 689 IPR047139 -
Trre13g01945 690 MobiDBLite consensus disorder prediction 586 610 - -
Trre13g01945 690 MobiDBLite consensus disorder prediction 25 49 - -
Trre13g01945 690 SUPERFAMILY beta-beta-alpha zinc fingers 61 93 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01945 Trre-Chr13 16648152 16654161 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01945 7 517 C2H2 Transcription Factor Family AT1G01930 53.308 0.0 535
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01945 K26089 - gmx:100527709 812.757