Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01938 ATGGCTTCAAACCTTCACCGAAATGGCGCTCAAAGAGGAAGCGCCAAATTCGATCGTCCTCTCAAGCCTCGTCCCCGCGGTTCCTCTCCTTCACCGGGATCCGGATTTCGCCGCCCTAACTCCGCCACACGAAACGACGCTGTGCCTGGAAGAGTTCGGGTGGCTGTAAGATTGAGACCTCGAAATGCTGAAGAAGAGATGGCAGATGCTGATTTTGGTGACTGCGTTGAATTACAACCAGAGCTTAAAAGACTGAAACTTCGCAGAAACAATTGGGATTCAGACACCTTTGAGTTTGATGAGGTGCTTACTCAATCTGCATCACAGAAGCGTGTCTATGAGGTTGTGGCTAAGCCAGTTGTTGAGAGTGTCCTTGATGGCTATAATGGGACTGTGATGGCTTATGGTCAAACTGGAACGGGAAAAACTTTTACTCTTGGACAACTAGGGGAAGGAGACACCTCAAGTCGTGGAATCATGGTGCGTTCCATGGAGGATATTCTTGCCGATTTATCTCCAGATACCGATTCAGTCACTGTCTCGTATCTGCAGCTTTACATGGAGACTCTTCAGGACTTGCTTAATCCAGCAAATGATAACATCCCAATAGTAGAAGATCCAAGAACCGGCGATGTATCTTTGCCTGGGGCAACTCTTGTCGATATCAGGGATCAGCAAAGCTTTCTGGAGTTGTTGAGAATTGGGGAAGCTAACCGTGTTGCTGCAAATACTAAAATGAACACAGAGTCTTCTCGTAGTCATGCTATGCTGACGGTACATATTAAGAGGTCTGTCGCAGAAAGCGAAGATATTGTATCTAGTCAAAATGGTGATGTCTCGCACTTGATTAAACCTTCAAAACCACTTGTTCGGAAGAGCAAGTTGGTTGTGGTAGACTTAGCAGGTTCAGAGCGTGTTCATAAATCAGGAAGTGAAGGGCTCATGCTTGAGGAAGCTAAATCTATAAATCTTTCACTCAGTTCACTGGGAAAATGTATTAATGCTCTAGCAGAGAATAATGCTCATGTTCCATTTCGTGATTCAAAGCTCACCAGGATGCTCCGAGATTCTTTTGGTGGCACAGCTAGGACTTCATTGATAGTGACTATTGGTCCATCTCCACGCCATCGAGGAGAGACTTCCAGTACCATATTATTTGGCCAAAGGGCTATGAAAGTTGAGAATATGCTGAAAATAAAGGAGGAGTTTGATTATAAAAGCTTGTCACGAAAGCTTGAAATACAGTTGGATAAGCTCATTGCAGAGAATGAGAGGCAGCAGAAAGCTTTTGAGGATGACATTGAAAAAATAAATTTGGAGGCACAGTGTCGTATTATTGAGGCTGAGAGAAAATTTGCCAATGAATTAGAGAAAGAGAAACTGAAATGCCAGATGGAGTATATGGGAATTGTAAAGGAGCTGGAACAGAAATTGGTGTTGAATCAAGATAAACACGATTGCCATGCTGATAATGGAGAGGGGCCTGCGCAATCTTCTGCAGACGAAGTTGCTGAGCTCAAAATGCTGGTCGAAACTGAAAGCAGTAGAAGAAAGGCAGCTGAAGAAGAGATAACACGTCTAAAATGGCAGCTTGAAAAATATACACAATCAGACGAAGGAGGGTTTTTGGAGATTACAAAGCTTCACAACCTCCTGGAGGATGAAGCTCATCAGAAGAAGAAACTTGAAGAAGAAATAATAATATTAAGAAGTCAATTATTGCAATCGAACTATGAAATGGAGCAGATGAGAAGATGTTTGGAAGGTGGAAGCTCAGGGAGTACATTTTCTGCAACAGATTCCTCTGTGACTCAAGTTAGGCATTCCCAATTCAAAGATGCTGCGAATGGTCAGAAGTCATCTGTTGCTACACTCTTTGAGCAAGTTGGATTAGAAAAGATTTTGTCATTGCTGGAGTCAGACGATGCCAATGTACGAATTCATGCTGTGAAAGTGGTGGCCAACCTAGCAGCCGAAGAGGCTAATCAAAAGAGAATTGTTGAAGCTGGTGGTCTTACTTCCTTGCTGATGCTTCTTCGAAGATATGAGGATGAAACTGTTCGTAGAGTAGCTGCTGGGGCGATTGCCAATCTTGCCATGAATGAAGCCAATCAAGAACTTATAATGGCTGAAGGAGGAATTACTCTGCTATCAATGGCTGCATCTGATGCCGAAGATCCCCAAACTCTTCGAATGGTTGCTGGGGCAATTGCTAACCTATGTGGAAATGATAAAATATTGATGACTCTGAGATCTCAGGGAGGTATCAAGGCCTTACTAGGAATTGTAAGATGTGGACATCCAGATGTTCTTTCCCAAGTTGCACGAGGAATTGCCAATTTTGCAAAATGCGAGTCTCGAGCTTCTAATCAAGGGATAAAAACTGGCAGATCTATACTGATAGAAGATGGTGCACTTCCGTGGATAGTACAAAATGCTAATAATGAAGCTGCACCGATCAGGCGTCACATTGAGCTTGCACTCTGCCACTTGGCACAGCATGAAGCGAATGCAAAAGATATGATTAGTGGAGGTGCTCTTTGGGAACTTGTCAGGATTTCAAGTGATTGTTCACGAGAGGATATACGGAGTCTTGCTCGTAAGACTCTCAGTTCTATCACAGCTTTCAAATCTGAATTACGACGATTGCGTATAGATTATTGA 2664 0.4336 MASNLHRNGAQRGSAKFDRPLKPRPRGSSPSPGSGFRRPNSATRNDAVPGRVRVAVRLRPRNAEEEMADADFGDCVELQPELKRLKLRRNNWDSDTFEFDEVLTQSASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGQLGEGDTSSRGIMVRSMEDILADLSPDTDSVTVSYLQLYMETLQDLLNPANDNIPIVEDPRTGDVSLPGATLVDIRDQQSFLELLRIGEANRVAANTKMNTESSRSHAMLTVHIKRSVAESEDIVSSQNGDVSHLIKPSKPLVRKSKLVVVDLAGSERVHKSGSEGLMLEEAKSINLSLSSLGKCINALAENNAHVPFRDSKLTRMLRDSFGGTARTSLIVTIGPSPRHRGETSSTILFGQRAMKVENMLKIKEEFDYKSLSRKLEIQLDKLIAENERQQKAFEDDIEKINLEAQCRIIEAERKFANELEKEKLKCQMEYMGIVKELEQKLVLNQDKHDCHADNGEGPAQSSADEVAELKMLVETESSRRKAAEEEITRLKWQLEKYTQSDEGGFLEITKLHNLLEDEAHQKKKLEEEIIILRSQLLQSNYEMEQMRRCLEGGSSGSTFSATDSSVTQVRHSQFKDAANGQKSSVATLFEQVGLEKILSLLESDDANVRIHAVKVVANLAAEEANQKRIVEAGGLTSLLMLLRRYEDETVRRVAAGAIANLAMNEANQELIMAEGGITLLSMAASDAEDPQTLRMVAGAIANLCGNDKILMTLRSQGGIKALLGIVRCGHPDVLSQVARGIANFAKCESRASNQGIKTGRSILIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEANAKDMISGGALWELVRISSDCSREDIRSLARKTLSSITAFKSELRRLRIDY 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01938 887 SMART arm_5 619 658 IPR000225 GO:0005515
Trre13g01938 887 SMART arm_5 701 742 IPR000225 GO:0005515
Trre13g01938 887 SMART arm_5 743 783 IPR000225 GO:0005515
Trre13g01938 887 SMART arm_5 834 875 IPR000225 GO:0005515
Trre13g01938 887 SMART arm_5 659 700 IPR000225 GO:0005515
Trre13g01938 887 SMART kinesin_4 49 401 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre13g01938 887 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 51 428 IPR027417 -
Trre13g01938 887 MobiDBLite consensus disorder prediction 1 49 - -
Trre13g01938 887 Gene3D - 596 791 IPR011989 -
Trre13g01938 887 Gene3D - 792 884 IPR011989 -
Trre13g01938 887 Coils Coil 409 440 - -
Trre13g01938 887 FunFam Kinesin-like protein 43 423 - -
Trre13g01938 887 Coils Coil 545 572 - -
Trre13g01938 887 Pfam Kinesin motor domain 57 393 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre13g01938 887 ProSitePatterns Kinesin motor domain signature. 293 304 IPR019821 GO:0003777|GO:0005524|GO:0007018
Trre13g01938 887 ProSiteProfiles Kinesin motor domain profile. 51 393 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre13g01938 887 SUPERFAMILY ARM repeat 615 881 IPR016024 -
Trre13g01938 887 PRINTS Kinesin heavy chain signature 294 312 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre13g01938 887 PRINTS Kinesin heavy chain signature 343 364 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre13g01938 887 PRINTS Kinesin heavy chain signature 127 148 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre13g01938 887 Coils Coil 503 537 - -
Trre13g01938 887 CDD KISc 51 391 - -
Trre13g01938 887 Gene3D Kinesin motor domain 42 423 IPR036961 -
Trre13g01938 887 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 629 671 IPR000225 GO:0005515
Trre13g01938 887 FunFam Kinesin-like protein 599 875 - -
Trre13g01938 887 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 670 713 IPR000225 GO:0005515
Trre13g01938 887 PANTHER CENTROMERE PROTEIN E 51 616 IPR027640 GO:0003777|GO:0007018
Trre13g01938 887 Pfam Armadillo/beta-catenin-like repeat 662 699 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01938 Trre-Chr13 16555406 16576152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01938 50 437 Calmodulin-binding Proteins AT5G65930 34.328 1.30e-47 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01938 - K10396 gmx:100789455 1499.57