Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01931 ATGAGTCTAAACTCAAGTGCAAGCGGCGGTAGCAGTGGTGGTGGTGGTGGTAGCGGCAATAGCGGTAGCCCTTGTGGGGCATGCAAGTTTTTGAGGAGGAAGTGTGTGCCAGGGTGTATTTTTGCTCCGTACTTTGATTCGGAGCATGGTACGACCCACTTCGCAGCGGTGCACAAAGTTTTTGGGGCTAGCAATGTATCCAAACTCCTCCTTGGGATTCCAGTTAATAGGAGGCTTGATGCTGCAGTCTCTCTTTGTTATGAAGCTCAAGCAAGGTTGAGAGATCCTATCTATGGATGTGTTGGTCACATCTTTGCTCTCCAACAACAGGTGCTGAGTCTACAAGCTGAACTCTCCTACGTGCAAAGCCACATTAGTTCATCAGAGTTAAACCAACCACCTCTACCACCACCACGGGCAGCTGTGGCACCAGCCGTCTTCTCCTTTGCCGATCTTCCACCACCCACCGCCACAACTATGCCGGTCACCTATGACATGTCTACACTTTTTGATCCTATGGGCCAACCTTCATTGGCTATGCATCAACAGAGGCCCAATATTGACCCACGTCAATATTTAGCTGCTCATGGCCCAACATCAACCAGCAGTTCTCACAGACAAATTGGCTCTTCATCTGGACCAGCCTCCAATGCTTCATCATCTCCTTCCTTCTCCAAATTTTCAAAATGA 690 0.4913 MSLNSSASGGSSGGGGGSGNSGSPCGACKFLRRKCVPGCIFAPYFDSEHGTTHFAAVHKVFGASNVSKLLLGIPVNRRLDAAVSLCYEAQARLRDPIYGCVGHIFALQQQVLSLQAELSYVQSHISSSELNQPPLPPPRAAVAPAVFSFADLPPPTATTMPVTYDMSTLFDPMGQPSLAMHQQRPNIDPRQYLAAHGPTSTSSSHRQIGSSSGPASNASSSPSFSKFSK 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01931 229 MobiDBLite consensus disorder prediction 1 21 - -
Trre13g01931 229 PANTHER LOB DOMAIN CONTAINING PROTEIN 21 134 - -
Trre13g01931 229 Pfam Lateral organ boundaries (LOB) domain 24 122 IPR004883 -
Trre13g01931 229 MobiDBLite consensus disorder prediction 175 229 - -
Trre13g01931 229 MobiDBLite consensus disorder prediction 195 229 - -
Trre13g01931 229 ProSiteProfiles LOB domain profile. 23 125 IPR004883 -
Trre13g01931 229 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01931 Trre-Chr13 16479341 16483059 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01931 27 192 AS2 family AT2G45420 61.494 4.54e-66 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre13g01931 LOB 1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01931 K21994 - jre:109010320 241.891