Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01930 ATGAGGATTCCAGTTCATAAACGTCTTGATGCTGTTCTTACTCTTTGCTATGAGGCTCTTGCTAGAGCTACTGACCCTGTTTATGGCTGTGTGGCTCATATTTTTGCTCTTCAACAACAGGTTGTGGAGTTACAAGCAGAGTTGGCCTATGTACAAGCCCGTCTTTCAATATTGAATCGCATCTCTCAAGATTCTCAATTTCAACAGCCTCAAAATTCTTCAATATCCCCAACTCTTCATTCCTCATTACTTCATCATTTGTCATCAAACAATGAAACTTCTTACATGTCCATGCAAAATCATCATCCAATACCTTTTGAATTAAGCAACTTTCACAATAATCCATCATACTATTCCTATCATCAACAACTCAATGATCAACAACTCCAAGCTAATTTGCCTCGAGAATTTTAG 414 0.3768 MRIPVHKRLDAVLTLCYEALARATDPVYGCVAHIFALQQQVVELQAELAYVQARLSILNRISQDSQFQQPQNSSISPTLHSSLLHHLSSNNETSYMSMQNHHPIPFELSNFHNNPSYYSYHQQLNDQQLQANLPREF 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01930 137 ProSiteProfiles LOB domain profile. 1 55 IPR004883 -
Trre13g01930 137 PANTHER LOB DOMAIN CONTAINING PROTEIN 2 115 - -
Trre13g01930 137 Pfam Lateral organ boundaries (LOB) domain 2 52 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01930 Trre-Chr13 16457683 16460486 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01930 1 78 AS2 family AT2G45410 61.538 6.48e-26 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre13g01930 LOB 9.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01930 - - mtr:11426685 186.808