Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01929 ATGGATTTGGGATGTGGTGGTGATGGACCTTGTGGTGCTTGCAAGTTTCTAAGGAGAAAATGTGTGAAAGGTAGTTGCATATTTGCACCTTATTTTGAATCATCAGGACAAGGAAGTGCTCATTTTGCTGCAGTTCATAAGGTGTTTGGTGCTAGCAATGCAGCTAAGTTACTGATGAGGATTCCAGTTCATAAACGTCTTGATGCTGTTCTTACTCTTTGCTATGAGGCTCTTGCTAGAGCTACTGACCCTGTTTATGGCTGTGTGGCTCATATTTTTGCTCTTCAACAACAGGTTGTGGAGTTACAAGCAGAGTTGGCCTATGTACAAGCCCGTCTTTCAATATTGAATCGCATCTCTCAAGATTCTCAATTTCAACAGCCTCAAAATTCTTCAATATCCCCAACTCTTCATTCCTCATTACTTCATCATTTGTCATCAAACAATGAAACTTCTTACATGTCCATGCAAAATCATCATCCAATACCTTTTGAATTAAGCAACTTTCACAATAATCCATCATACTATTCCTATCATCAACAACTCAATGATCAACAACTCCAAGCTAATTTGCCTCGAGAATTTTAG 588 0.3895 MDLGCGGDGPCGACKFLRRKCVKGSCIFAPYFESSGQGSAHFAAVHKVFGASNAAKLLMRIPVHKRLDAVLTLCYEALARATDPVYGCVAHIFALQQQVVELQAELAYVQARLSILNRISQDSQFQQPQNSSISPTLHSSLLHHLSSNNETSYMSMQNHHPIPFELSNFHNNPSYYSYHQQLNDQQLQANLPREF 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01929 195 ProSiteProfiles LOB domain profile. 9 113 IPR004883 -
Trre13g01929 195 PANTHER LOB DOMAIN CONTAINING PROTEIN 9 171 - -
Trre13g01929 195 Pfam Lateral organ boundaries (LOB) domain 10 110 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01929 Trre-Chr13 16457683 16460660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01929 4 139 AS2 family AT4G00210 64.286 2.82e-55 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre13g01929 LOB 1.3e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01929 - - mtr:11426685 299.286