Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01925 ATGGAAGGGAGAGAAGGTAACAACTCAGGCGTAACGGTGATAGGAGCAGAAACTCCATCAACTTATCATATGGCACCAAGGAGTGAAGCTCCAACTCAACATGGTGCTGTTCCCGAATCAGGAAGTGGAGCTATCGGTGTCTCACCGGTGAGTGTAGGATTGGATGGCGGAACAATTAAGAAAAAAAGAGGTAGGCCAAGGAAATATGGGCCAGACGGGTCGGTTGCTGCTGTGGCGTTGTCACCGTTGCCAATCTCATCTTCAGCTCCTTTTGTTAATGAATTTTCAACGGCGAAGCAGGGGAAACCAAAGGGAATGGAGTTTAAGCAGTCGAAAAAAGTTGGAGTTGATCCTCTAGGTGACTCGGTTGGTACCAACTTTATGCCGCATATCATTACCGTCAATGCTGGCGAGGACATTACAATGAAAGTTATATCTTTTTCGCAACAAGGACCACGAGCTATATGCATCCTATCTGCTAGTGGCGTGATTTCAAATGTTACACTTCGTCAGCCTGATTCTTCTGGCGGTACTTTGACCTATGAGGGCCGTTTTGAGATACTTTCGCTATCTGGATCATTCATGCCTACCGAGAGCCAAGGAACAATAAGCCGGTCCGGTGGAATGAGTGTTTCTTTGTCAAGCCCTGATGGCCGCGTTGTAGGCGGTGGAGTTGCCGGTCTTCTTGTAGCTGCCACTCCTGTGCAGGTGGTGGTTGGAAGTTTTCTACCAAGTAACCAACAAGACCAGAAAACGAAGAAGCCAAAATCCGATTATGCAACAGCTACCGTTACCGCACCTATTGCAGTGTCTTCGGCACCACCTTCAACCAATGGCGAAAGGGTAGATGTCATGTGTGGACACCCAATGCAAAATTCCGGAACACTAAACTCAAACTTTACTCCTCCTTCGGCCTTTCGCAGAGAAAACTGGGTTAACATGCACTCCATGCCTGACTCAATGAAGTCTGCAACCGATATTAACATATCTTTGCCTGATAATTAA 1005 0.4706 MEGREGNNSGVTVIGAETPSTYHMAPRSEAPTQHGAVPESGSGAIGVSPVSVGLDGGTIKKKRGRPRKYGPDGSVAAVALSPLPISSSAPFVNEFSTAKQGKPKGMEFKQSKKVGVDPLGDSVGTNFMPHIITVNAGEDITMKVISFSQQGPRAICILSASGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTESQGTISRSGGMSVSLSSPDGRVVGGGVAGLLVAATPVQVVVGSFLPSNQQDQKTKKPKSDYATATVTAPIAVSSAPPSTNGERVDVMCGHPMQNSGTLNSNFTPPSAFRRENWVNMHSMPDSMKSATDINISLPDN 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01925 334 MobiDBLite consensus disorder prediction 1 49 - -
Trre13g01925 334 SUPERFAMILY AF0104/ALDC/Ptd012-like 127 246 - -
Trre13g01925 334 CDD DUF296 129 242 IPR005175 -
Trre13g01925 334 ProSiteProfiles PPC domain profile profile. 124 265 IPR005175 -
Trre13g01925 334 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 24 308 IPR039605 GO:0003680
Trre13g01925 334 Gene3D - 129 264 - -
Trre13g01925 334 FunFam AT-hook motif nuclear-localized protein 1-like 129 260 - -
Trre13g01925 334 Pfam Plants and Prokaryotes Conserved (PCC) domain 129 242 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01925 Trre-Chr13 16433021 16434792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01925 6 273 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 57.096 1.24e-97 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01925 - - gmx:100777213 498.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g01925 13 16433021 16434792 Trre13g01925 13 16433021 16434792 ECH
Trre13g01925 13 16433021 16434792 Trre15g01373 15 10703540 10706739 PCT