Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01916 ATGTTGCTACCTTCATCTTCCAACAATCTCAACAATTCCTCAAACTACACTCATTTTCAACAACCAATTGTAGAAGAACAAAACCCTCTTCCTACAATCTGTGGATTCTCTGGTTTACCACTTTTTCCATCTCAAAACCAAAACAACAGAAACATAACTTCTGCAGCAGCTGCTACTAATAATAATAATAATAATAATAATAATAATATTGTTGATGTTGTTTCACCTTCTATGATGGAAGAAACCTCAGCTACAACAAATTGGATTGATGGTATTCTTAAAGATCTTATTCATAGTTCTAACAGTGTTTCCATTTCACAACTTATCAACAATGTTAGAGAGATTATATATCCTTGTAATCCAAACCTTGCTCTTGTTCTTGAACATAGACTTCGTCTTTTGACAGAAACTACACCAACACAAAACTGTTCTGTTGGTGTTACAGACAGAAAAAGAAACAACACAGAACAACAACAACAACAACAAAGTGTTGTTAATGTTAATGTTTTAGCAGCTTCTAATGTTAATTCCTCAGTGAAACTTATGAATCCTGTTGATGACATTGTTCAAACAAGTTTACATTTTTCTGATACATCACATGTTTTGAATCAAAATCAAAACATTTTTCCTAATTGGGTTGTGCCTCAAAATCAAATCAACAACAATAACAACCCTTCAGTTTCATTGGTTACTTTACCTTCACCACAACCACAACAAGATCAACAACAACAACAACACCAAGAACATCATCAACAAGAAGATCTTGTACCTGCAAGAACAGCAGAAACTACTTCTGCTGAGTTGGCACTAAGAAGAAAAAAGAAAGAAGAGATTAAAGAACAGAAGAAGAAAGATGAAGAAGGTTTACACCTTCTAACACTACTTCTTCAATGTGCAGAAGCTGTATCAGCAGAGAATCTAGAACAAGCAAACAAGATGTTACTCGAGATTTCGCAGCTGTCGACGCCTTTCGGAACATCAGCACAAAGAGTAGCAGCTTATTTCTCAGAAGCAATTTCAGCAAGACTAGTGAGTTCATGTTTAGGAATCTACACAACACTTCCACAACACATTACACCACATAATCAAAAAGTTGCTTCAGCTTTTCAAGTCTTCAATGGAATAAGCCCATTTGTGAAATTCTCTCATTTCACTGCTAACCAAGCTATACAAGAAGCATTTGAAAGAGAAGAAAGAGTTCACATCATAGATCTTGATATAATGCAAGGTTTACAATGGCCTGGTTTGTTTCATATTCTCGCTTCGAGACCCGGTGGACCACCTTATGTGAGACTCACTGGATTAGGTACTTCCATGGAAACACTTGAAGCTACTGGTAAACGTTTGTCTGATTTTGCATCTAAACTTGGTCTTCCTTTTGAGTTCTTTCCTGTTGCTGAAAAAGTTGGAAACATTGATCCTGAGAAGCTTAATGTTAGTAAATCAGAAGCTGTTGCTGTTCATTGGTTGCAACATTCTTTATATGATGTTACTGGATCAGATACAAACACTTTGTGGCTCTTGCAAAGGTTGGCACCGAAAGTGGTAACGGTAGTGGAACAAGATTTAAGCAATGCAGGTTCATTTTTAGGAAGGTTTGTGGAAGCAATACATTACTACTCAGCACTATTTGATTCTCTTGGTTCAAGCTATGGTGAAGAGAGTGAAGAGAGACATGTGGTGGAGCAACAGCTATTATCAAGAGAGATTCGTAATGTACTTGCAGTTGGAGGACCATCAAGGAGTGGTGAAATAAAGTTTCATAATTGGAGAGAAAAACTTCAACAATGTGGCTTTAGAGGTATATCTTTGGCTGGTAATGCTGCTACTCAAGCTAGTCTTCTTCTTGGCATGTTCCCTTCTGAAGGGTATACTTTAGTTGAGGATAATGGTATCCTTAAACTTGGTTGGAAAGATCTTTGTTTGCTTACTGCTTCTGCTTGGAGACCTCCTTTTCATACCAACAATGTCATTCCACATCATAACTAA 1989 0.367 MLLPSSSNNLNNSSNYTHFQQPIVEEQNPLPTICGFSGLPLFPSQNQNNRNITSAAAATNNNNNNNNNNIVDVVSPSMMEETSATTNWIDGILKDLIHSSNSVSISQLINNVREIIYPCNPNLALVLEHRLRLLTETTPTQNCSVGVTDRKRNNTEQQQQQQSVVNVNVLAASNVNSSVKLMNPVDDIVQTSLHFSDTSHVLNQNQNIFPNWVVPQNQINNNNNPSVSLVTLPSPQPQQDQQQQQHQEHHQQEDLVPARTAETTSAELALRRKKKEEIKEQKKKDEEGLHLLTLLLQCAEAVSAENLEQANKMLLEISQLSTPFGTSAQRVAAYFSEAISARLVSSCLGIYTTLPQHITPHNQKVASAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMETLEATGKRLSDFASKLGLPFEFFPVAEKVGNIDPEKLNVSKSEAVAVHWLQHSLYDVTGSDTNTLWLLQRLAPKVVTVVEQDLSNAGSFLGRFVEAIHYYSALFDSLGSSYGEESEERHVVEQQLLSREIRNVLAVGGPSRSGEIKFHNWREKLQQCGFRGISLAGNAATQASLLLGMFPSEGYTLVEDNGILKLGWKDLCLLTASAWRPPFHTNNVIPHHN 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01916 662 Pfam GRAS domain family 292 649 IPR005202 -
Trre13g01916 662 ProSiteProfiles GRAS family profile. 282 649 IPR005202 -
Trre13g01916 662 MobiDBLite consensus disorder prediction 216 245 - -
Trre13g01916 662 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 277 644 IPR005202 -
Trre13g01916 662 MobiDBLite consensus disorder prediction 216 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01916 Trre-Chr13 16279546 16282088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01916 256 650 GRAS Transcription Factor Family AT3G54220 84.131 0.0 667
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre13g01916 GRAS 3.3e-124 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01916 - - gmx:100806779 837.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g00439 7 2749932 2752546 Trre13g01916 13 16279546 16282088 PCT