Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01912 ATGGGCAACTGCGGTACCAGAGAAGAATCCGCCGTAATTACCAATGCTCAAGTTCAGCAGCTACATCCTGCTACCGGAGCTAGAAATCAAACCTCCGTCACCGGCGGCGTTACTGAGAGAAAAAACTCTAGTCTACGACATCATCTAACCGATTCTGCTTCGGATCTGAGCGAGTCTTGTTCAACGCCTCGCTGGATCAACGCTAATAATAGCAATACTCTTCTTTATACTCATGTTATAGCTTTCACGCTTTACGAACTCGAAACCATAACGAAGAGTTTTCGTACCGATTATATTTTGGGTGAAGGAGGGTTTGGTACTGTTTATAAAGGCTACATTGATGAAAATGTTAGGGTTGGACTTAAATCGCTTCCTGTTGCTGTTAAAGTTTTGAATAAAGAAGGACTTCAAGGACATAGAGAGTGGCTTGCGGAGGTGAATTTTCTTGGACAGCTTAGGCATCCTAATCTTGTGAAGTTGATTGGTTACTGCTGTGAGGATGATCATAGGTTGCTTGTCTATGAATTCATGTTTCGAGGAAGTCTCGAAAATCATCTATTCCGAAAGGCAACTGTTCCTTTATCATGGGGTACAAGAATGATGATTGCTCTTGGTGCTGCCAAAGGACTTGCCTTTCTCCACAACGCCGAAAGGCCAGTAATCTATCGCGACTTCAAGACGTCTAATATATTATTGGACTCTGATTATACAGCCAAGCTTTCTGATTTTGGGTTAGCTAAAGCAGGGCCTCAAGGTGATGAAACCCATGTATCCACCCGAGTCATGGGTACATATGGTTATGCTGCCCCTGAATATGTGATGACAGGCCACCTAACAGCTAGGAGTGATGTATATAGCTTTGGGGTTGTTCTTTTGGAGCTTTTAACGGGAAGGAAATCCGTCGATAAGACCAGACCTGGGAAGGAACAAAGCTTGGTAGATTGGGCTCGCCCAAAGCTCAACGATAAAAGAAAGCTCCTACAAATAATCGATCCTAGACTGGAGAATCAATATTCAGTGAGGGCAGCACAGAAAGCATGTAGCCTGGCTTACTACTGTTTAAGTCAAAATCCGAAAGCGAGGCCACTGATGAGTGATGTAGTTGAGACATTGGAACCCTTACAAAGTTCTAGCGTTGGTGCAGATGAAGTCTCATTATCAGGATCAAATAGTGGGAGTGGCGGTCCTTTTGCTATGAATAAAATATCCGACTACCGGATGCGTCATAAGTTTTCAAACAACGTTGGTCCAGGTGCTACATGTCGGTCTCCAAACCCAAATTGCTCACCAGGTGGTGCTCCTGCAGCATTGCGGGTTAGATGA 1323 0.4422 MGNCGTREESAVITNAQVQQLHPATGARNQTSVTGGVTERKNSSLRHHLTDSASDLSESCSTPRWINANNSNTLLYTHVIAFTLYELETITKSFRTDYILGEGGFGTVYKGYIDENVRVGLKSLPVAVKVLNKEGLQGHREWLAEVNFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRKATVPLSWGTRMMIALGAAKGLAFLHNAERPVIYRDFKTSNILLDSDYTAKLSDFGLAKAGPQGDETHVSTRVMGTYGYAAPEYVMTGHLTARSDVYSFGVVLLELLTGRKSVDKTRPGKEQSLVDWARPKLNDKRKLLQIIDPRLENQYSVRAAQKACSLAYYCLSQNPKARPLMSDVVETLEPLQSSSVGADEVSLSGSNSGSGGPFAMNKISDYRMRHKFSNNVGPGATCRSPNPNCSPGGAPAALRVR 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01912 440 FunFam Probable serine/threonine-protein kinase PBL8 177 389 - -
Trre13g01912 440 Gene3D Transferase(Phosphotransferase) domain 1 177 387 - -
Trre13g01912 440 ProSiteProfiles Protein kinase domain profile. 94 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01912 440 ProSitePatterns Protein kinases ATP-binding region signature. 100 129 IPR017441 GO:0005524
Trre13g01912 440 FunFam Serine/threonine-protein kinase BIK1 61 176 - -
Trre13g01912 440 MobiDBLite consensus disorder prediction 20 40 - -
Trre13g01912 440 CDD STKc_IRAK 100 374 - -
Trre13g01912 440 Gene3D Phosphorylase Kinase; domain 1 57 176 - -
Trre13g01912 440 PANTHER OS01G0588500 PROTEIN-RELATED 57 375 - -
Trre13g01912 440 MobiDBLite consensus disorder prediction 20 48 - -
Trre13g01912 440 Pfam Protein tyrosine and serine/threonine kinase 98 371 IPR001245 GO:0004672|GO:0006468
Trre13g01912 440 MobiDBLite consensus disorder prediction 416 440 - -
Trre13g01912 440 SUPERFAMILY Protein kinase-like (PK-like) 63 371 IPR011009 -
Trre13g01912 440 ProSitePatterns Serine/Threonine protein kinases active-site signature. 220 232 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01912 Trre-Chr13 16218811 16221677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01912 67 381 Glycoside Hydrolase AT3G07070 52.648 4.65e-109 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre13g01912 PK_Tyr_Ser-Thr 9.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01912 - - gmx:102662348 782.326