Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01891 ATGGCTGCAAATTCTGATAATATCTTGTCCTTGTCATTGTGGCCTACTTCAGAGGTTCATGGTGGCACTGATTCTCCCCGGATTGCAGTGTGTTCTCTTTGCCGCAAAGCCTTATCACCTGAAGATGAGATAACAGGTGATCTTTCCACCGGTGGTGTATGCGGTGATTGTAAGTTTTTATTGCTTGAAGATTTTGGGAATCACACCCTTACACAAAGCTCTCGAAGGAGGCTTAGAGGAAGATTGAGACATGGTAGTTCTGAGTCAGTTGAGAACCTGGCATCTGGAGATGAAGATCAACTTGTAGATGGTGACAACCCTGCATGGTCATTGCAATATGCTAGTGCAAATACGACTCCTAGTGGGTCTAGAACCTGGAGGCATGCTCTCTCAGATACTGAGAGTGATGGTTTTGATAATTGGTGTTCTCTTTATGGTGAAAATGAATTTGGTAATTCGTCTCCTTTTTATAGTGAAAATGAATCAAGTTCGAGTTTTAGACCGTATAGGATTCCTCGCAGTGAGACTGATTCTTTTGCTTTCAGTGCTTATGGTGGTGACTCAGATATCTCTATGGATAGACAGAGTTTTGTAGGCACTGGAATTTTTAATTTACCTGATGAGGGAGATGCGCTTGATAGTGACACTGACATAGATCCAATGCATGCTGGCATTGGCCATTGGAATTCGGATGATACGGACGATGATGACGAAGAGGAGGACGATGAAGACGAGGGGGAAAGGGAACTACCTGAAGTTGACGAAGGTGAAGCTGCTACTGGAATATTTAGCCAGATAATCAGAGAAACATGGTTAGCTTTGGACGACGCTGATTTATCTCATGGAGCTAATTTTGGAGATTTCCTTGATACTAGACACTTCGATGATCTGCTTGATCGTCTTGCTGAAAATGACAGCTCAAGACGAGGAGCACCTCCTGCTGCTGCGTCGTTTGTGAATAGTCTTCCTTGTGTAATCATTAGCAAGGAACACGAGAAGCACGATGAACTAGTTTGTGCCATCTGCAAAGATGTTTTGGCCCTTGGCACTGAAGTAAATCAACTTCCATGTTCTCACCTTTACCATTCTCATTGCATTTTGCCGTGGTTGAAGACACGTAATTCGTGCCCTCTTTGTCGTTTTGAGCTTCCAACCGATGATAAGGATTACGAAGAGGGAAAACAAAACACTGATGGTAGAAATGTGATCTATGAGAGACAGCAACTAAATGTTATGGATGATAGTTTCTCCGATATTTCCGATGGAGCTGAAGCAGGTGAAGAAGATGGTATCACTATTCATGATACCGCTGATTCTTCCGCAATAAGCGGCGGTAGAGGAAGATGGTTGTTTCTTGCTGCAGCTCCAATTGTTAGTCTAGTAGGAATGGTTATTGTACTGTGGTTAGGTAGGAACTCTCAAATTGAAGGGACTAGACATTCAAGTGCTCACTATTTGTCTGCGCAAAATCAGCACGGTGTTCGTGTTTATGGTTCTCAAAACCAAAGGGAGAGTAGAAGCAGAAGATGGTGGTGTCCATTCTAA 1545 0.4317 MAANSDNILSLSLWPTSEVHGGTDSPRIAVCSLCRKALSPEDEITGDLSTGGVCGDCKFLLLEDFGNHTLTQSSRRRLRGRLRHGSSESVENLASGDEDQLVDGDNPAWSLQYASANTTPSGSRTWRHALSDTESDGFDNWCSLYGENEFGNSSPFYSENESSSSFRPYRIPRSETDSFAFSAYGGDSDISMDRQSFVGTGIFNLPDEGDALDSDTDIDPMHAGIGHWNSDDTDDDDEEEDDEDEGERELPEVDEGEAATGIFSQIIRETWLALDDADLSHGANFGDFLDTRHFDDLLDRLAENDSSRRGAPPAAASFVNSLPCVIISKEHEKHDELVCAICKDVLALGTEVNQLPCSHLYHSHCILPWLKTRNSCPLCRFELPTDDKDYEEGKQNTDGRNVIYERQQLNVMDDSFSDISDGAEAGEEDGITIHDTADSSAISGGRGRWLFLAAAPIVSLVGMVIVLWLGRNSQIEGTRHSSAHYLSAQNQHGVRVYGSQNQRESRSRRWWCPF 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01891 514 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 300 386 IPR013083 -
Trre13g01891 514 MobiDBLite consensus disorder prediction 80 101 - -
Trre13g01891 514 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 230 384 - -
Trre13g01891 514 Pfam Ring finger domain 339 380 IPR001841 -
Trre13g01891 514 SUPERFAMILY RING/U-box 319 386 - -
Trre13g01891 514 MobiDBLite consensus disorder prediction 231 252 - -
Trre13g01891 514 FunFam E3 ubiquitin-protein ligase RING1-like 300 386 - -
Trre13g01891 514 SMART ring_2 339 379 IPR001841 -
Trre13g01891 514 ProSiteProfiles Zinc finger RING-type profile. 339 380 IPR001841 -
Trre13g01891 514 MobiDBLite consensus disorder prediction 210 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01891 Trre-Chr13 16101450 16102994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01891 29 514 C3H Transcription Factor Family AT5G01980 41.021 4.50e-103 316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01891 - - psat:127127254 716.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g01891 13 16101450 16102994 Trre13g01891 13 16101450 16102994 ECH