Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01889 ATGGAAGGGAACGGGGATATGTTCAGATCTTCTCCTGTTGCCGGAGCATCATCGGCGTCATCATCATCATCAAATTCGAGAAGATATGGATTCCCGTCGGCAGCCAGTATAATTCAGGCACCGTTATCGGCGCTTCTTGAATACTCTGGTATTATTCCCTCCAGGTCGAATCAGCATCAACCTAACCCTGATTCTGTTCCAAACGATGGTGAGGTTTCGATTAGGATCATCGGTTCTACTGAGCAAGATAATCATAGGGAAGAAGAGGCTATACCGTTGGTGGTGAATGATGGGGCTGTGGCTTCCGCGACGACGTCTTCCCCTTCACAGGAGGATGTTGAGCGGACGGGGAGTGGAAATGTTGATGCAGAAGCAGGTGGTGGTGGTGGTGGTGATGGTGGTGGTGCCAATGGGAGAGATTCTTCTTATCAGAGATATGATATTCAGCATGCTGCTAGATGGATTGAGCAAGTATTGCCCTTTTCTTTGCTTCTTTTGGTTGTCTTCATTCGCCAACATTTGCAAGGGTTTTTTGTTACCATTTGGATTGCTGCTGTCCTTTTCAAGTCAAATGACATTCTGCGGAAACAAACGGCCTTGAAGGGAGAGAGGAAAATGCCTGTTTTGATTGGAATATCTGTTGCTTTTGCACTTCATGTTGTTGGTGTTTATTGGTGGTATCAAAATGATGATCTAATGTATCCTTTAGTCATGCTTCCTCCCAAGGAGATACCACCTTTCTGGCATGCTATTTTCATCATCATGGTGAATGATACTTTGGCACGCCAGGCTGCAATGGTATTGAAGTGTATATTGTTAATGTATTATAAGAATAGCAGAGGCCGCAATTATCGTAAGCAGGGGCAAATGCTGACTTTAGTTGAATACCTCCTCCTGCTTTACCGAGCCTTGTTGCCAGCACCAGTTTGGTATCGTTTCTTCTTGAACAAAGAATATGGAAGCCTCTTTTCATCACTGATGACAGGATTGTATCTAACATTTAAGCTTACATCTGTTGTTGAAAAGGTGCAATCTTTCTTTGCTTCAGTGAAAGCATTGTCACGTAAAGAAGTGCACTATGGGGCTTATGCAACATCAGAGCAGGTCATTGCAGCCGGTGATCTTTGTGCGATTTGTCAAGAGAAGATGCATGCCCCAATCTTACTTCGCTGTAAACACATTTTCTGTGAAGACTGTGTATCAGAGTGGTTTGAGAGGGAAAGGACCTGTCCATTGTGCAGGGCTTTGGTAAAACCTGCAGACCTCAGGTCATTTGGTGATGGCTCTACTAGTTTGTTTTTCCAGCTATTCTGA 1314 0.4429 MEGNGDMFRSSPVAGASSASSSSSNSRRYGFPSAASIIQAPLSALLEYSGIIPSRSNQHQPNPDSVPNDGEVSIRIIGSTEQDNHREEEAIPLVVNDGAVASATTSSPSQEDVERTGSGNVDAEAGGGGGGDGGGANGRDSSYQRYDIQHAARWIEQVLPFSLLLLVVFIRQHLQGFFVTIWIAAVLFKSNDILRKQTALKGERKMPVLIGISVAFALHVVGVYWWYQNDDLMYPLVMLPPKEIPPFWHAIFIIMVNDTLARQAAMVLKCILLMYYKNSRGRNYRKQGQMLTLVEYLLLLYRALLPAPVWYRFFLNKEYGSLFSSLMTGLYLTFKLTSVVEKVQSFFASVKALSRKEVHYGAYATSEQVIAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQLF 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01889 437 CDD RING-HC_RNFT1-like 374 414 - -
Trre13g01889 437 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 20 437 IPR044235 GO:0061630|GO:1904294
Trre13g01889 437 SUPERFAMILY RING/U-box 367 419 - -
Trre13g01889 437 Pfam Zinc finger, C3HC4 type (RING finger) 374 417 - -
Trre13g01889 437 SMART ring_2 376 413 IPR001841 -
Trre13g01889 437 MobiDBLite consensus disorder prediction 1 29 - -
Trre13g01889 437 MobiDBLite consensus disorder prediction 93 138 - -
Trre13g01889 437 ProSitePatterns Zinc finger RING-type signature. 391 400 IPR017907 -
Trre13g01889 437 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 351 424 IPR013083 -
Trre13g01889 437 MobiDBLite consensus disorder prediction 99 116 - -
Trre13g01889 437 ProSiteProfiles Zinc finger RING-type profile. 376 414 IPR001841 -
Trre13g01889 437 MobiDBLite consensus disorder prediction 11 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01889 Trre-Chr13 16083964 16088512 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01889 1 437 C3H Transcription Factor Family AT5G01960 68.834 0.0 621
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01889 - K22379 gmx:100818546 650.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g01889 13 16083964 16088512 Trre13g01889 13 16083964 16088512 ECH