LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre13g01878	ATGTTGGTTCTAAGAATTTATGGATATGCTTTGGCTTTTTCATTTTGTTTCATCACCCTCATGGCAGCTTCACCAAGAACACATCCTTCAGAAGTAAAAGCACTGCTAGACATAAAAAAGAGTTTGGTTGATCCCATGGACAAACTAAGGAACTGGAATAAGAGGGATCCATGTACTACTGCAAACTGGACTGGAGTTTGGTGTTTTGATAAGAAGGGTGATGATGGTTACTTCCATATCCGCGAACTCTACTTGATGACTTCGAATCTCTCGGGAACTTTAGCACCTCAGCTTGGTCTTCTCTCCCATCTTGTGATAATGGATTTCATGTGGAACAATCTGACCGGCACAATACCGAAGGAGATTGGCAACATTAAATCATTGAGACTCTTACTTCTGAATGGAAATCAATTATCTGGTAGTTTACCAGACGAGCTTGGCAACCTTTCAAATATAGGCAGACTCCAACTGGATGAAAACCGATTGTCAGGTCCTGTGCCGGAATCATTTGCTAACTTGGTCAATGTTAGACACCTTCACATGAACAACAACTCATTCAATGGTCAAATTCCACCCGCACTTTCAAACCTATCCAATCTTATGCATTTGCTTTTGGACAACAATAACTTATCGGGATATCTTCCACCAGAATTCTCGAAGTTACAAAGTTTGGAAATACTCCAACTTGATAACAATAATTTCAGCGGGAATGGAATTCCTTCTAGTTATGAAACTTTCCGCAGGCTTGTAAAACTGAGTCTAAGAAATTGCAGTCTGCAAGGACCTATTCCTAATTTGAGTTCAATACGAAACCTTACATATTTGGATCTAAGCTGGAATCAGTTCAGTGGACCTATACCATTACATAAACTTGCAGACCATATGACAACAGTTGATTTGTCCCACAACAAACTCAATGGAACAATTCCTCGAGGCGTAATATATCCTCATCTTCAAAGATTGCAACTAGAGAACAATTTACTGACTGGATCCTTCCCTACTACCATATGGCAGAATATATCCTTCAGCAGGAAGGCGAAACTTATAATTGATATTGGTAACAACTTACTTTCTGACATTTTTGGAGATTTGAATCCCCCGGAAAATGTTACCTTAAGGCTTTTTGGAAATCCTGTTTGCAAGAATTCCAACATACAAAGAATTGGTCAATTTTGTGTTCTTGAAGGGCGTGACTTAGACGAAGAATATGCAAATTCAACCATCTGCCCCGCTCAATCTTGTCCATTGGACAATTTCTATGAATTTGCACCCTCGTCCCCAATTAATTGTTTTTGTGCAGCACCTATAAGAATTGGATATAGGCTAAAAAGTCCAAGTTTTTCTTACTTTCCTCCCTATAAAAATAGTTTCGTATCGTACATAACTGATGCCTTAAACTTAAGCTTCTATCAGTTATCAATAGATTCTTATGAATGGGAAGAAGGACCTCGTCTTAGAATGTATTTAAAAATTTTCCCTTCATACAACGATTCTCACTCCAACACATTCAGCCCAGAGGAGGTCCGTCGCATTAATATCATCTATTCATCATGGCGATTTCCTCACACGGATTTTTTTGGACCATATGAACTCCTGAATGTAACTCTTCTAGGACCTTATGCAAATATAATTATTAATACCGAGGGCGGCGGGAAGAGAAAAACAGGCATACTAGTTGCTATTATATTAGCAGCTGTTGCTTGTGTTTTAGCAATATCTGCAATAATCATGCTCCTAATTTTTAGAAGAAAGGTGAAATACCAGCACTTGATTTCGAGGAAGCGTATGTCCTCTAATGCATGTATCAAAATAGATGGTGTGAAAGCATTCACTTTGAAAGAGTTGACTCATGCTACCAACAAATTTGATATCTCAAGTAAAGTCGGTGAAGGAGGTTATGGAATTGTCTATAAGGGCATTTTATCCGATGAAACATTTGTTGCCGTTAAACGAGCAGGAGAAAATTCATTACAAGGACAAAAAGAGTTCTTGACTGAGATTGAACTTTTATCAAGGTTACATCATCGAAATCTCGTCTCACTAACTGGATACTGTAACGAAGAAGGAGAGCAGATGCTGGTTTATGAATTCATGCCCAATGGCACCCTTAGGGAATGGATTTCTGGTAAAAGTAAAAAATGCAAGGAAGGCCTAAGTTTTTTCATGAGATTACGGATTGCGATGGGTGCTTCCAAAGGCATATTATATCTGCATACAGAGGCTAACCCTCCTATATACCACAGAGATATTAAAGCCAGTAACATACTTCTAGACTCTAAGTTTACAGCTAAAGTGGCTGATTTTGGATTGTCGCGACTTATACCATACTCAGATGAAGATGGTCATGTACCTAATTATGTGTCAACAGTTGTGAAGGGAACACCGGGTTATCTTGACCCAGAATATATGATGACTCATAAGTTAACTGATAAAAGTGATGTATACAGCCTAGGAATCGTGTTTTTGGAGCTTTTGACTGGCATGCATCCAATATCACGCGGGAAAAACATTGTCCGCGAGGTTAATCTGGCTTGTCAATCTGGCACGATAGATTCAATTATCGATAACAGAATGGGCGAATATCCACCTGAATGTTTAGACAAGTTCTTAGCTCTAGCCCTCAGTTGCTGTGAAGATCATCCAGAAGAGAGACCATCAATGATAGATGTGGTGAGGGAATTGGAAGACATTATTGCCTTGTTACCTGAAACTGAAATTAGTTTATCAGATGTTTCCTTAGATAATTCTGGTAAAATGGTTCCCTCGTCTTCAGCGTCATCGTCAGCAACAACATCAGGATTCATTACGACGAGAAAGGACCAACAGCACATGTCCTCATTTGTGTCAGGAAGTGATCTTGTCAGTGATGTCATTCCGACTATTGTTCCTCGTTGA	2895	0.391	MLVLRIYGYALAFSFCFITLMAASPRTHPSEVKALLDIKKSLVDPMDKLRNWNKRDPCTTANWTGVWCFDKKGDDGYFHIRELYLMTSNLSGTLAPQLGLLSHLVIMDFMWNNLTGTIPKEIGNIKSLRLLLLNGNQLSGSLPDELGNLSNIGRLQLDENRLSGPVPESFANLVNVRHLHMNNNSFNGQIPPALSNLSNLMHLLLDNNNLSGYLPPEFSKLQSLEILQLDNNNFSGNGIPSSYETFRRLVKLSLRNCSLQGPIPNLSSIRNLTYLDLSWNQFSGPIPLHKLADHMTTVDLSHNKLNGTIPRGVIYPHLQRLQLENNLLTGSFPTTIWQNISFSRKAKLIIDIGNNLLSDIFGDLNPPENVTLRLFGNPVCKNSNIQRIGQFCVLEGRDLDEEYANSTICPAQSCPLDNFYEFAPSSPINCFCAAPIRIGYRLKSPSFSYFPPYKNSFVSYITDALNLSFYQLSIDSYEWEEGPRLRMYLKIFPSYNDSHSNTFSPEEVRRINIIYSSWRFPHTDFFGPYELLNVTLLGPYANIIINTEGGGKRKTGILVAIILAAVACVLAISAIIMLLIFRRKVKYQHLISRKRMSSNACIKIDGVKAFTLKELTHATNKFDISSKVGEGGYGIVYKGILSDETFVAVKRAGENSLQGQKEFLTEIELLSRLHHRNLVSLTGYCNEEGEQMLVYEFMPNGTLREWISGKSKKCKEGLSFFMRLRIAMGASKGILYLHTEANPPIYHRDIKASNILLDSKFTAKVADFGLSRLIPYSDEDGHVPNYVSTVVKGTPGYLDPEYMMTHKLTDKSDVYSLGIVFLELLTGMHPISRGKNIVREVNLACQSGTIDSIIDNRMGEYPPECLDKFLALALSCCEDHPEERPSMIDVVRELEDIIALLPETEISLSDVSLDNSGKMVPSSSASSSATTSGFITTRKDQQHMSSFVSGSDLVSDVIPTIVPR	964

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre13g01878	964	ProSiteProfiles	Protein kinase domain profile.	622	898	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre13g01878	964	FunFam	Leucine-rich repeat protein kinase family protein	586	697	-	-
	Trre13g01878	964	Gene3D	Ribonuclease Inhibitor	30	153	IPR032675	-
	Trre13g01878	964	Gene3D	Transferase(Phosphotransferase) domain 1	698	907	-	-
	Trre13g01878	964	SMART	serkin_6	622	898	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre13g01878	964	FunFam	Probable LRR receptor-like serine/threonine-protein kinase At1g06840	29	191	-	-
	Trre13g01878	964	FunFam	LRR receptor-like serine/threonine-protein kinase HSL2	698	910	-	-
	Trre13g01878	964	CDD	STKc_IRAK	628	897	-	-
	Trre13g01878	964	Gene3D	Phosphorylase Kinase; domain 1	592	697	-	-
	Trre13g01878	964	ProSitePatterns	Protein kinases ATP-binding region signature.	628	650	IPR017441	GO:0005524
	Trre13g01878	964	Pfam	Protein kinase domain	624	891	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre13g01878	964	SUPERFAMILY	Protein kinase-like (PK-like)	607	913	IPR011009	-
	Trre13g01878	964	Gene3D	Ribonuclease Inhibitor	154	237	IPR032675	-
	Trre13g01878	964	SUPERFAMILY	L domain-like	48	398	-	-
	Trre13g01878	964	PANTHER	RECEPTOR-LIKE PROTEIN 55	38	896	-	-
	Trre13g01878	964	Pfam	Leucine rich repeat N-terminal domain	29	68	IPR013210	-
	Trre13g01878	964	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	745	757	IPR008271	GO:0004672\|GO:0006468
	Trre13g01878	964	Gene3D	Ribonuclease Inhibitor	238	417	IPR032675	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre13g01878	Trre-Chr13	15976537	15982440	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre13g01878	5	905	Receptor kinase-like Gene Family	AT5G01950	59.713	0.0	1066

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-VIII-1	Trre13g01878		Pkinase	2.8e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre13g01878	-		-	gmx:100815005	1391.71