Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01866 ATGATGCCACAAACACAATCCTATTTAGTCACTATACACATTTTCTTATTACTACTTGTGTTTCCTCAAACTAAATCTGATCTAAATTCAGAAAAGCAAGCATTACTTGATTTTATTGCTGCATTACATCATGGTGAAAAACTCAATTGGAGTTCCAATACTTCAATATGCACTTCTTGGATAGGAGTTAAATGCAATCATAAGTTCTCTCATGTTCACTCCGTGCGCCTTCCGGGCGTTGGATTGCGCGGTTCTCTCCCGGAAAACACCCTCGGTAAGCTACATGGTTTAATCAGTCTAAGTCTTAGGTCTAATAGCTTGAGTGGAAACCTTCCAAGTGACATATTTTCAATTCCTTCTCTAAGATTTATATATCTTCAACATAACAATTTTTCAGGTCATATTTCTGATTATTTACCACCCCATCTTATGTTTCTTGATTTGTCCTATAACTTTTTCACTGGAAAAATTCCAAGCATAATCCAAAACTTGACATATCTTATAGGACTAAACCTTCAAAATAACTCTCTCATAGGACCTATTCCAAATGTTATTGTTGAGCTTCCTAATCTTAAGAATTTGGATTTGAGCTTCAACTATTTGAATGGTTCAATCCCTTCAGGGTTTCATAAGTTTCATGCATCATCATTTAAGGGTAATTTAGGATTATGTGGTGCACCTTTGAAACAATGTTCTTTAGGTTCTTCCCCTACTACTATTTTGTCTCCACTAATAGTCTCACAAAAAGTACCTAATGATATCTCAAACAAGAAGCTAAGTACATGGGGAAAAATTGCTATTGCTTTGGGAGTTTTTGCAGCAATGCTTCTTCCAGTTCTTGTAGTAGGGTTCTGCTGTTTCAAGAAAAAAGTTGGTGAACAAAATGTAGCAACTAAAGAGAAGAGTGAGAAGCTTATGGAGGAATTTGGAAGTGGTGTGCAAGAACATGAGAGAAACAGGTTAATATTTTTTGAAGGTTGTTCTTATAATTTTGATCTTGATGATTTGTTAAGAGCTTCAGCTGAAGTGCTTGGTAAGGGAAGTTGTGGAACAACTTATAAAGCTATTTTGGAAGAAGGGACTATAGTGGTTGTGAAGAGATTAAAAGAAGTGGCAGTGGTTAAAAAAGAATTTGAACAGCAAATGGAGATTGTTCAAAGGCTTAATCATCATCCAAATGTAGTTCCACCTAATGCTTACTATTATTCAAAGGATGAAAAATTGATTGTTTATGATTATTTCACATCTGGCAGCTTTTCCAAGTTATTGCATGGAACAGGTGAAACTGCACGAACTCGACTAGATTGGGATTCAAGATTGAAGATCATGGCTGGAGCTGCTAAGGGCATTGCCCATATTCACTCAGCAAATGGAAGGAAACTTGTCCATGGCAATATAAAATCATCCAATGTGCTACTCTCAATAGATCTTCAAGGCTGCATTTCAGATTTTGGCCTAACACCTCTAACAAGTTTATGTGTCTCCTCCAGAAGTCCACCAGGGTACCGAGCACCGGAGGTGAACGAAAACAGAAAATTCACTCAAAAATCTGACGTATACAGCTTTGGTGTTCTTCTTCTTGAGATGCTGACAGGGAAAACACCAGTTCAATATTCAGGGCATGAAGATGTGGTTGATCTTCCAAAATGGGTCCAATCTGTTGTTAGAGAGGAATGGACTGCTGAAGTGTTTGATGTTGAGCTAATGAGATATTCAAACATTGAAGAAGAACTTGTGCAGATGTTGCAACTGGCAATGGCATGTGTAGCAGTGATGCCTGACACAAGACCTTCAATGGAAGAAGTTGTTAGGATGATTGAAGACATAAGAGGATCCATTTATTAA 1845 0.3724 MMPQTQSYLVTIHIFLLLLVFPQTKSDLNSEKQALLDFIAALHHGEKLNWSSNTSICTSWIGVKCNHKFSHVHSVRLPGVGLRGSLPENTLGKLHGLISLSLRSNSLSGNLPSDIFSIPSLRFIYLQHNNFSGHISDYLPPHLMFLDLSYNFFTGKIPSIIQNLTYLIGLNLQNNSLIGPIPNVIVELPNLKNLDLSFNYLNGSIPSGFHKFHASSFKGNLGLCGAPLKQCSLGSSPTTILSPLIVSQKVPNDISNKKLSTWGKIAIALGVFAAMLLPVLVVGFCCFKKKVGEQNVATKEKSEKLMEEFGSGVQEHERNRLIFFEGCSYNFDLDDLLRASAEVLGKGSCGTTYKAILEEGTIVVVKRLKEVAVVKKEFEQQMEIVQRLNHHPNVVPPNAYYYSKDEKLIVYDYFTSGSFSKLLHGTGETARTRLDWDSRLKIMAGAAKGIAHIHSANGRKLVHGNIKSSNVLLSIDLQGCISDFGLTPLTSLCVSSRSPPGYRAPEVNENRKFTQKSDVYSFGVLLLEMLTGKTPVQYSGHEDVVDLPKWVQSVVREEWTAEVFDVELMRYSNIEEELVQMLQLAMACVAVMPDTRPSMEEVVRMIEDIRGSIY 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01866 614 PANTHER OS05G0588300 PROTEIN 10 610 - -
Trre13g01866 614 ProSiteProfiles Protein kinase domain profile. 338 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01866 614 Gene3D Ribonuclease Inhibitor 29 140 IPR032675 -
Trre13g01866 614 SUPERFAMILY L domain-like 47 212 - -
Trre13g01866 614 Gene3D Transferase(Phosphotransferase) domain 1 415 613 - -
Trre13g01866 614 Pfam Leucine rich repeat N-terminal domain 29 66 IPR013210 -
Trre13g01866 614 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 414 612 - -
Trre13g01866 614 Pfam Leucine rich repeat 141 201 IPR001611 GO:0005515
Trre13g01866 614 FunFam pollen receptor-like kinase 1 306 413 - -
Trre13g01866 614 Gene3D Phosphorylase Kinase; domain 1 304 413 - -
Trre13g01866 614 FunFam Probable inactive receptor kinase RLK902 28 185 - -
Trre13g01866 614 Pfam Protein kinase domain 341 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01866 614 SUPERFAMILY Protein kinase-like (PK-like) 342 606 IPR011009 -
Trre13g01866 614 Gene3D Ribonuclease Inhibitor 141 233 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01866 Trre-Chr13 15846376 15848642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01866 26 612 Receptor kinase-like Gene Family AT5G58300 59.865 0.0 696
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre13g01866 Pkinase 8.8e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01866 - - gmx:100810832 936.791