Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01858 ATGATGAGGAACAAGAATAGATACTTTGTTTGTATTCCATTGTTTGTTTGCTTGGTGTTAGCTATTGAACTTGTTCTAGCACAAGATTTTAAGCCTACCGATAAAATCCTGTTGAATTGTGGTGGCCCTGCTGTTAGTACTGATCCTGATGGCCGTGAATGGACTACTGATAATGGTTCCAAGTTTGGTTCCAAAACTGGTAAATCAACCACATCACAGGCTGCAACTCAAGATCCTGCAGTGCCTCAGGTTCCATACATGACGGCGCGGATTTTCCAATCGCCGTATACCTATAGTTTTCCTGTGGCTTCGGGTTGGAAGTTCCTCCGGTTGTACTTTTATTCGGCTTCTTATTCTGGGCTTAATATATCTGATGCACGATTTGGTGTGACAGCGCAATCGTACACCGTGCTTAGGAATTTCAGTGTTTTAGAGACCAGTTTGGGTTTGAATTATGAATACATTGTGAAGGAATACTCTATCCATGTTGATGAGGGAACCTTGAATGTGACTTTTACTCCATCTACCAGTGCATCTAAAGCTTATGCATTTGTTAATGGGATTGAGGTTGTGTCCATGCCTGATATTTATACTGCTACCGATGGAACCACCATGATTGTTGATACAAACACTGCCTTCACCATTGACAACACCACTGCACTTGAGAATGTTTATAGGGTAAATGTGGGTGGGAATGATATCTCGCCGTCCCATGATACCGGCATGTTTAGGTCATGGACCGATGATGTGCGTTACATCTTTGGGGCCGCATTTGGAGTTACCGAGACTGCTGATCCAGAAGTGAAGTTTGAGTATCCTCCGGGCACACCATCTTATATTGCTCCAAAAGACGTCTACTTGACGGCCAGATCAATGGGTCCGAATGCCAATATCAGCTTGAATTTCAACTTGACTTGGATTTTCACAATAGATTCTGGGTTTTCCTATCTTGTGAGACTTCATTTTTGTGAGGGCACGACGACTATAACAAAGGTTAATCAAAGAGTATTTGATATATTCCTTGGTAATCAAACCGCTCAGGATGGAGCTGATGTTATTGCCTGGGCCAAAAATTTTGACCTTCCACATTCAAACGGTGTTCCGGTGCATCAAGATTATGTTGTATTTGTTCCCAATGGCCCACCACGGCAGGACCTGTGGCTTGCACTGCCTCCAGATACAACTTCTAAGTCCAATTACTACGACGCAATCTTGAACGGAGTGGAGATATTCAAAATCAGTGATAGTAAAGGTAATCTGGCTGGGACAAACCCTCCTCCTCTGCCGATGCAAGACTTAATTGACGTGTCATTGGCTAGGAAATCTAGTCATGGTAAATCTAAGAGTCATACAGGAATTATTGCTGGAGGTATTGGTGGAGGAGTTGTTTTACTACTTTTGATCGGACTATTTGCTTTTGGTACATCTCGTCGCCGTAGGAATGGAAAAGACTCTAGTACAAGTGAAGGGCCGTCTGGCTGGCTTCCACTTTCTCTTTATGGTAATTCACACTCTGCAGCTTCTGGCAAGACCAACACGACTGGAAGTTACACATCCACTCTTCCATCAAACCTTTGTCGTCATTTCTCATTTGCTGAAATCAAGGCTGCTACAAACAACTTTGACGAGGCTTTGATTCTCGGTGTGGGAGGATTTGGCAAGGTTTACAAAGGAGAAATTGATGGCGGATCAACCAAGGTTGCAATTAAACGTGGGAATCCACTCTCCGAGCAAGGTGTGCACGAATTCCAAACTGAAATTGAGATGCTCTCCAAACTTCGTCACCGTCACCTGGTTTCACTGATTGGATACTGTGAAGAGAACACTGAAATGATCCTTGTCTATGATCACATGGCCTATGGAACACTCAGAGAGCATCTATACAAGACTCAGAAACCTCCACTTCCATGGAAGCAAAGGCTCGAGATATGCATTGGAGCTGCTCGCGGTTTACACTATCTTCACACGGGAGCTAAGCATACTATCATCCACCGAGACGTGAAGACAACAAACATTTTACTAGATGAGAAATGGGTGGCCAAGGTTTCTGATTTCGGATTGTCTAAAACAGGTCCTACATTGGATAATACTCACGTAAGTACTGTGGTAAAGGGTAGTTTTGGTTACTTGGATCCAGAATACTTCAGGAGGCAGCAACTGACCGACAAATCCGATGTGTACTCATTTGGTGTGGTTCTATTCGAGATACTGTGCGCTCGTCCGGCTTTGAACCCAACACTTGCTAAGGAGCAGGTGAGTCTAGCTGAATGGGCAGCTCATTGCTACAAAAAAGGCATTCTTGACCAAATCACGGATCCTTATCTGAAGGGCAAGATAGCTCCGGAATGTTTTAAGAAGTTTGCGGAGACCGCAATGAAGTGTGTGAACGACCAAGGCATTGAAAGGCCATCCATGGGTGATGTCTTGTGGAACCTGGAATTTGCTTTGCAGCTGCAAGAAAGCGCAGAGGAGAGTGGCAACGGTTTTGGTGGAATATGCGGTGAAGAGGAGCCGTTGTTTGTAGATTCAAAAGGAAAGAAGGAGTTGGATGCAGGTTATGATGGTACTGTGACAGATTCTAAAAGCAGTGGCATGTCTATGAGCATTGGAGGTAGAAGCTTGGCTAGTGAAGACTCTGATGGGTTAACTCCTAGTGCTGTGTTTTCACAGATCATGAATCCAAAAGGACGTTAA 2694 0.441 MMRNKNRYFVCIPLFVCLVLAIELVLAQDFKPTDKILLNCGGPAVSTDPDGREWTTDNGSKFGSKTGKSTTSQAATQDPAVPQVPYMTARIFQSPYTYSFPVASGWKFLRLYFYSASYSGLNISDARFGVTAQSYTVLRNFSVLETSLGLNYEYIVKEYSIHVDEGTLNVTFTPSTSASKAYAFVNGIEVVSMPDIYTATDGTTMIVDTNTAFTIDNTTALENVYRVNVGGNDISPSHDTGMFRSWTDDVRYIFGAAFGVTETADPEVKFEYPPGTPSYIAPKDVYLTARSMGPNANISLNFNLTWIFTIDSGFSYLVRLHFCEGTTTITKVNQRVFDIFLGNQTAQDGADVIAWAKNFDLPHSNGVPVHQDYVVFVPNGPPRQDLWLALPPDTTSKSNYYDAILNGVEIFKISDSKGNLAGTNPPPLPMQDLIDVSLARKSSHGKSKSHTGIIAGGIGGGVVLLLLIGLFAFGTSRRRRNGKDSSTSEGPSGWLPLSLYGNSHSAASGKTNTTGSYTSTLPSNLCRHFSFAEIKAATNNFDEALILGVGGFGKVYKGEIDGGSTKVAIKRGNPLSEQGVHEFQTEIEMLSKLRHRHLVSLIGYCEENTEMILVYDHMAYGTLREHLYKTQKPPLPWKQRLEICIGAARGLHYLHTGAKHTIIHRDVKTTNILLDEKWVAKVSDFGLSKTGPTLDNTHVSTVVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLFEILCARPALNPTLAKEQVSLAEWAAHCYKKGILDQITDPYLKGKIAPECFKKFAETAMKCVNDQGIERPSMGDVLWNLEFALQLQESAEESGNGFGGICGEEEPLFVDSKGKKELDAGYDGTVTDSKSSGMSMSIGGRSLASEDSDGLTPSAVFSQIMNPKGR 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01858 897 Gene3D Phosphorylase Kinase; domain 1 526 617 - -
Trre13g01858 897 Gene3D Transferase(Phosphotransferase) domain 1 618 828 - -
Trre13g01858 897 ProSiteProfiles Protein kinase domain profile. 541 815 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01858 897 MobiDBLite consensus disorder prediction 851 897 - -
Trre13g01858 897 FunFam FERONIA receptor-like kinase 35 194 - -
Trre13g01858 897 PANTHER OS03G0124300 PROTEIN-RELATED 10 484 IPR046957 GO:0004672
Trre13g01858 897 ProSitePatterns Serine/Threonine protein kinases active-site signature. 662 674 IPR008271 GO:0004672|GO:0006468
Trre13g01858 897 MobiDBLite consensus disorder prediction 51 77 - -
Trre13g01858 897 FunFam FERONIA receptor-like kinase 219 414 - -
Trre13g01858 897 MobiDBLite consensus disorder prediction 856 890 - -
Trre13g01858 897 FunFam Receptor-like protein kinase FERONIA 618 828 - -
Trre13g01858 897 SUPERFAMILY Protein kinase-like (PK-like) 514 814 IPR011009 -
Trre13g01858 897 MobiDBLite consensus disorder prediction 48 77 - -
Trre13g01858 897 CDD STKc_IRAK 547 813 - -
Trre13g01858 897 SMART serkin_6 541 815 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01858 897 ProSitePatterns Protein kinases ATP-binding region signature. 547 570 IPR017441 GO:0005524
Trre13g01858 897 FunFam Receptor-like protein kinase FERONIA 513 617 - -
Trre13g01858 897 Pfam Malectin-like domain 38 413 IPR024788 -
Trre13g01858 897 Gene3D - 220 414 - -
Trre13g01858 897 Gene3D - 36 194 - -
Trre13g01858 897 Pfam Protein tyrosine and serine/threonine kinase 547 809 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01858 Trre-Chr13 15808728 15811421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01858 19 897 Receptor kinase-like Gene Family AT3G51550 71.833 0.0 1273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Trre13g01858 Malectin_like 5.8e-35 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01858 - - gmx:100499644 1527.69