Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01851 ATGGCTTCCCTACTCTCTACAACAACAAAAACAACATTTCAACACACTCATAATAATAAAATCTGCTTCTCTCCTCTAAAATTCTCCACCCAATTTAACAATTCTTTCTTAACAAACCATTTTAACAATACTCATTCTATAAGGTGCAGTGCATTTTTTGATATCATACCAAAAGACATATTATTGAACAGCACTTTTTATTTGGATAAGTTTGAGAATGTGAGTGAGAACTTAACAGACATGCAGATGTTGGAGATTTTGGTCTTTGTTGGGTTATCATGGTTATACTTAACTGCAAGACCAGGTGTTCTTTTTGGTGCTATTGATGCATACCTTTTGGCTCCAATGCAGTTGGTTTTGGATAGTTTATCTGGAAGGAGAAACATGAAGAGAAGTGATTTCTTGATTGGAGGTAAGATAGGAGAAGGGTCATTTGGTGTTGTTTATTCTGCTGTTTTGGTAACAAAGATTAAAGAGAATGGAAGAAGCAAGTTAGATGCCAAATCTAAGGATAAAGTCATTCTTAAAAAGGTAAAGGTTGGAATTGAAGGGGCTAAAGAATTTGGCGATTATGAAGAGTGGTTTAATTACAGACTCTCTAGAGCAGCTCCTGAAACATGTGCCAAGTTCCTCGGAAGTTTTGTAGCCGATAAAAGCAATTCACAATTCACAAAAGGCGGAAAATGGCTTGTTTGGAAATTTGAGGGAGACAGTACACTTGCCGATTACATGACAGATAAAAACTTCCCTTCAAACTTAGAATCTGTCATGTTTGGAAGAGTCTTGCAAGGCGTAGATTCTTCTAAAAGAAATGCATTGATCATCAAGCAAATAATGCGCCAAATCGTTACATCTCTTAAGAAAATTCATGACACTGGCATTGTTCATAGGGATGTAAAGCCTTCTAACTTGGTTGTTACAAGAAAAGGGAAGATCAAACTCATTGATTTTGGTGCAGCAACAGACCTTAGAATTGGAAAGAATTTTGTTCCTAATTATACTCCTTTGGATCCTGATTACTGTCCTCCTGAACTATATGTGCTACCACAAGACACACAAAGTCTTCCTCCAGAGCCAATTGCAGCTCTACTTTCACCAATCCTGTGGCAGTTAAACAGTCCTGATCTCTTTGATATGTATTCTGCTGGAATTGTACTCTTGCAAATGGCAATACCAACTTTAAGGTCTCAAGCTGCTTTAAAGAATTTCAATTTGGAAATGAGGACATGTGGATACGATTTATACAAATGGAGAGACTCTACTCGAATGAAGTCCAACTCCCAAATACTTGACAGCGATTCTGGTAGAGGATGGGACTTAGCATCAAAGCTTATTTCCAAGAGAAGTTCCGAAAGAACACGGCGTTTATCTGCTGCTTCTGCTTTGAGGCATCCTTATTTTCTTCTAGGCGGTGATCAGGCAGCTGCAGTTCTTTCGAAATTCAGCTTTAGCACAAAGTGA 1461 0.3785 MASLLSTTTKTTFQHTHNNKICFSPLKFSTQFNNSFLTNHFNNTHSIRCSAFFDIIPKDILLNSTFYLDKFENVSENLTDMQMLEILVFVGLSWLYLTARPGVLFGAIDAYLLAPMQLVLDSLSGRRNMKRSDFLIGGKIGEGSFGVVYSAVLVTKIKENGRSKLDAKSKDKVILKKVKVGIEGAKEFGDYEEWFNYRLSRAAPETCAKFLGSFVADKSNSQFTKGGKWLVWKFEGDSTLADYMTDKNFPSNLESVMFGRVLQGVDSSKRNALIIKQIMRQIVTSLKKIHDTGIVHRDVKPSNLVVTRKGKIKLIDFGAATDLRIGKNFVPNYTPLDPDYCPPELYVLPQDTQSLPPEPIAALLSPILWQLNSPDLFDMYSAGIVLLQMAIPTLRSQAALKNFNLEMRTCGYDLYKWRDSTRMKSNSQILDSDSGRGWDLASKLISKRSSERTRRLSAASALRHPYFLLGGDQAAAVLSKFSFSTK 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01851 486 SUPERFAMILY Protein kinase-like (PK-like) 131 468 IPR011009 -
Trre13g01851 486 CDD STKc_SNT7_plant 139 467 - -
Trre13g01851 486 Gene3D Phosphorylase Kinase; domain 1 122 234 - -
Trre13g01851 486 ProSitePatterns Serine/Threonine protein kinases active-site signature. 294 306 IPR008271 GO:0004672|GO:0006468
Trre13g01851 486 ProSiteProfiles Protein kinase domain profile. 134 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01851 486 SMART serkin_6 134 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01851 486 Pfam Protein kinase domain 274 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01851 486 Gene3D Transferase(Phosphotransferase) domain 1 265 469 - -
Trre13g01851 486 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 69 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01851 Trre-Chr13 15762039 15764982 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01851 134 323 MAP Kinase Kinase Kinase AT3G13530 24.352 1.13e-09 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Trre13g01851 Pkinase 2.5e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01851 - - gmx:100795624 711.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g01851 13 15762039 15764982 Trre13g01851 13 15762039 15764982 ECH
Trre15g00015 15 174129 175950 Trre13g01851 13 15762039 15764982 PCT