Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01849 ATGAGTTCAACAACCACTGGAGCATACTTGGTTTCCTGTAATTCGGGAAACAAGAACAACGGTCTCTTCTGCTGGATTGTGATCTGCTTGCTGCCAAAATTCTTGGGAACTGCATTTGCCTACATCAACTTTCTTCTCATTCACGCTATTGATAGGAGTCCATCAGCAGTGAGGGTGCTGGAGAACTTCGATTTTTCTGATGTCTTCGGTCCACTTACCGTAGAAGTCAATGATGAATTGATTGATGAATCGAGCGAGCTGGTTTATGATGACCCAGAAGTCATTTACACCCGCTCACATTCTCTTGTTGGCCCTTCTAGTTGTATCAGTCAATCACTTAAACTCGGTAAGCTCACCATACACGAGTCTGACTCTGCCGAATCATTGAAACTAGTGGAGCCCGTCACTGAAGAGACTATTGAAGACATCAAAGAGTCTAACACTGACAATGTTATCATTGACGAATCTTTGAATGATGAAGATGAGAACCTCATGGAGATCCAAAGAGTTAGCATTGAAGATTTTGAGGTTTTGAAGGTTGTGGGGCAAGGAGCATTTGCAAAAGTGTATCAGGTGAGGAAAAAGGGCACTTCAGAAATATATGCTATGAAGGTTATGCGGAAGGATAAGATTATGGAGAAGAACCATGCTGAATACATGAAAGCTGAGAGGGAGATTTTGACAAAGATAGAGCACCCCTTTGTTGTACAACTTAGATACTCTTTTCAGACAAAATACAGATTGTATCTTGTGCTCGATTTCGTTAATGGTGGTCATCTCTTCTTTCAGCTTTATCACCAGGGGCTTTTCAGAGAGGATCTAGCACGCATATACGCCGCCGAGATTGTTTCTGCAGTTTCCCATCTCCACTCAAAAGGAATAATGCACAGGGATCTAAAACCTGAAAATATCCTAATGGATGCTGATGGCCATGTTATGTTGACTGATTTTGGCTTAGCAAAGCAATTTGAAGAAAGTACAAGATCTAATTCGATGTGTGGCACATTAGAGTACATGGCACCTGAAATTATTCTCGGCAAGGGCCATGATAAGGCTGCCGATTGGTGGAGTGTAGGCATCTTATTGTTCGAGATGCTTACCGGAAAGCCGCCCTTCTGTGGTGGGAACCGTGAGAAGATTCAGCAGAAGATAGTGAAAGATAAGATTAAGCTGCCAGGATATTTGTCAAGCGAAGCGCATGCACTCTTGAAAGGGCTGCTACAGAAGGAGGCATCAAAGCGTTTAGGTTGTGGAGCTAAAGGGATTGAGGAAATTAAAGGGCACAAGTGGTTCAAACCAATCAATTGGAAGAAGTTGGATGCACGCGAAATTGAACCAAGCTTTCGGCCAGATGTAGCTGGAACGCACTGTGTTGCCAACTTTGAGAAGCGCTGGACTGACATGCCTCTTGTTGATTCACCAGCTGCAAGCCCAAATGGTGGAAACCCCTTCAAGGACTTCTCTTATGTGAGACCTGCAGCCTCTTTTCTTCAAAACAATAGCCCTGCTTGCTAA 1515 0.4356 MSSTTTGAYLVSCNSGNKNNGLFCWIVICLLPKFLGTAFAYINFLLIHAIDRSPSAVRVLENFDFSDVFGPLTVEVNDELIDESSELVYDDPEVIYTRSHSLVGPSSCISQSLKLGKLTIHESDSAESLKLVEPVTEETIEDIKESNTDNVIIDESLNDEDENLMEIQRVSIEDFEVLKVVGQGAFAKVYQVRKKGTSEIYAMKVMRKDKIMEKNHAEYMKAEREILTKIEHPFVVQLRYSFQTKYRLYLVLDFVNGGHLFFQLYHQGLFREDLARIYAAEIVSAVSHLHSKGIMHRDLKPENILMDADGHVMLTDFGLAKQFEESTRSNSMCGTLEYMAPEIILGKGHDKAADWWSVGILLFEMLTGKPPFCGGNREKIQQKIVKDKIKLPGYLSSEAHALLKGLLQKEASKRLGCGAKGIEEIKGHKWFKPINWKKLDAREIEPSFRPDVAGTHCVANFEKRWTDMPLVDSPAASPNGGNPFKDFSYVRPAASFLQNNSPAC 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01849 504 Pfam Protein kinase domain 175 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01849 504 CDD STKc_AGC 181 431 IPR045270 GO:0004674|GO:0005524
Trre13g01849 504 FunFam Non-specific serine/threonine protein kinase 172 278 - -
Trre13g01849 504 Gene3D Phosphorylase Kinase; domain 1 172 472 - -
Trre13g01849 504 Pfam Protein kinase C terminal domain 454 489 IPR017892 GO:0004674|GO:0005524|GO:0006468
Trre13g01849 504 ProSitePatterns Serine/Threonine protein kinases active-site signature. 294 306 IPR008271 GO:0004672|GO:0006468
Trre13g01849 504 ProSitePatterns Protein kinases ATP-binding region signature. 181 204 IPR017441 GO:0005524
Trre13g01849 504 FunFam Non-specific serine/threonine protein kinase 255 450 - -
Trre13g01849 504 Gene3D Transferase(Phosphotransferase) domain 1 255 450 - -
Trre13g01849 504 SUPERFAMILY Protein kinase-like (PK-like) 172 491 IPR011009 -
Trre13g01849 504 SMART serkin_6 175 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01849 504 SMART pkinase_C_6 432 491 IPR000961 GO:0004674|GO:0005524|GO:0006468
Trre13g01849 504 ProSiteProfiles AGC-kinase C-terminal domain profile. 432 499 IPR000961 GO:0004674|GO:0005524|GO:0006468
Trre13g01849 504 PANTHER RIBOSOMAL PROTEIN S6 KINASE 139 494 - -
Trre13g01849 504 ProSiteProfiles Protein kinase domain profile. 175 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01849 Trre-Chr13 15758145 15760890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01849 63 501 AGC Kinase Gene Family AT3G08720 70.814 0.0 636
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC-Pl Trre13g01849 Pkinase 3.2e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01849 K04688 - gmx:100805922 763.451