Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01844 ATGAGTTCTGATCAACCACTTCTTTCAGAACCAGATCTTGTTGTTCCTCCAGTCATTCATCATCGCCACTGCAAATCCGGATCCCGCACTTCCTTCTTTGAGGCAGTCGCGGCTGCGGTAGAGTCTTCTCCGACATCCAACCATCACCGGGAAGTTGTGTTGGCGAAAGATTGCAGCTTCCACTCTGCATTTTCCCACAATAATACTAACAGCAGTGGCAGCATTTGCATTTCATCATCCTCTTTAACAGAGGTTCAAAACCCTGATTCGGAGTTTCGTTTGGAATGCCCCACGCGGGAAAGGGGACGCCTGCGATCCTGGGGTGCAATGGAACTGCATGATTCAAATACTGCGCCCTTTGAAATTTCAACAGCTTCTGCAGTAACAGCAGCTCCATCTCGCAGGATTCGTCATAAAAGTGTGCAGTTTGATGAACAAATTTTACATGATGATAATGCTAGGTTGATCTATATAAATGATCCTAAGAAAACGAATGATAAGTATGAGTTTACTGGGAATGAGATCCGAACTAGTCGATACACTTTTATCACATTCTTGCCTAAGAATTTATTTATTCAGTTCCATAGGGTTGCTTATTTGTATTTCCTTGCTATTGCTGCACTCAATCAGCTTCCACCCTTAGCTGTATTTGGGAGGACAGTGTCCCTTTTTCCGCTTTTGTTTGTTCTTTGTGTTACTGCTATTAAGGATGGGTATGAGGATTGGAGGAGACATAGGTCCGATAACAATGAGAACAATCGTGAGTCTTTGGTTCTTCAGTCCGGTGATTTCCGGTCCAAGGTATGGAAAAAGATTCAGGCTGGTGAGGTCGTTAAGATCTTTGCTGATGAGACCATTCCTGCTGATATGGTTTTGTTGGGTACAAGTGATCCGAGTGGGCTTGCTTATATTCAGACAATGAATTTGGATGGAGAATCAAATTTGAAGACGAGGTATGCCAAGCAGGAAACGACTTCTGCAGTATCTTCGGAGGTTTGTGATATTGCTGGGATTATTAGATGCGAGCAGCCAAACCGGAATATTTATGAGTTCACAGCTAATATGGAGTTCAATGGAATTAAGTTTTCCCTTAGCCAGTCAAACATTGTCCTGAGAGGTTGCCAGCTGAAGAACACGGATTGGATAATTGGTGTTGTTGTTTATGCAGGGCAGGAAACAAAAGCCATGCTGAACAGTGCGGCTTCTCCTTCCAAGAGAAGCAGACTGGAAGGTTATATGAATAGAGAAACCCTTTGGTTGTCAATTTTTCTTTTTATCATGTGTTTGGTTGTGGCCCTTGGAATGTGTCTTTGGCTGGTACGTCACAAGAACCAGCTTGATACCTTGCCTTACTACAGAAAAAGATACATCAACAATGGCCCGGAATATGGAAAGAAATATAAGTATTATGGGATACCAATGGAAGCATTTTTCTCCTTTTTGAGTTCGGTTATAGTGTTCCAGATAATGATACCCATATCTCTTTACATCACAATGGAGTTGGTTCGATTGGGTCAGTCATACTTCATGATTGAAGACATGCATATGTATGACGCTAGCTCTGGATCAAGGTTTCAGTGTAGATCATTAAATATAAATGAAGATTTGGGTCAAATACGCTATGTATTTTCAGACAAGACAGGAACACTAACAGAAAACAAGATGGAATTCCGGAGGGCTAGCGTACATGGGGATAATTATGGGAACTCCTTGTTTGCTGCCGAGGATAGTTCAGCAGCAACAGATGTTATTCCTAAACGGAGATGGAAACTCAAATCTGAAATTTCAGTTGATCCCAAACTAATGACCGTGTTGCATAAAAACCCAAATAGAGATGAAAGAATAGTTGCTCATGAGTTTTTTCTTACATTGGCTGCTTGTAATACTGTGATTCCTATACTTACTGATGGTGAATTTTCTGGTTGTGGAACAAGTGAATCAAATGGATATGCAGAGTGCATTGATTACCAGGGAGAATCCCCTGATGAACAAGCTCTAGTTTCTGCAGCCTCTGCATATGGATACACTCTTTTTGAGCGGACATCTGGACATATTGTTATTGACATCAATGGTGAGAAACTCAGATTGGACGTATTGGGCCTGCATGAGTTTGATAGTGTGCGAAAGAGAATGTCCGTTGTTATTCGGTTTCCTGACAATGTTGTAAAGGTGCTAGTCAAAGGAGCTGATACATCAATGTTTAGCATTTTGGCAAATGGCAGTGAGAGCCACAATAGCTTATTGCATGCAACGCACAGCCATTTGACTGAATATTCTTCGCAAGGTTTGCGCACCCTTGTAGTGGCCTCTAGAAGTCTTTCTGATGCTGAACTTGAGGAGTGGCAAAGCAGGTATGGAGAGGCAAGCACTGCCTTAACTGACCGAGCTAGTAAACTACGTCAAGCGGCAGCTCTTATAGAATGCAATTTAAATCTACTTGGAGCAACTGGAATTGAGGACAAGCTGCAAGAGGGTGTACCAGAAGCCATTGAGTCCCTACGGCAAGCTGGAATCAAGGTCTGGGTTCTTACTGGTGATAAACAAGAGACTGCGATTTCAATTGGTCTTTCCTGCAAGCTTCTTAGTGCAGATATGCAGCAAATTGTTATAAATGGCACTTCAGAGGAGGAATGCAAAAATCTTTTGGGTGATGCAATAGCTAAATATGGTGTGAGATCTTCAAGAAGAGGGCATCAGAATCTGAATAATAAAACCAATGCTCAACATGGTGATCTTGATATTTCCAATGGTTCAAAGTCAATGAGTTTGCCCAAGTGGAATCCAGGAAAGGAAGAAGAAACTAATACTCCATTGGCACTCATAATTGATGGGAACAGTTTGGTTTATATTTTAGAGAAAGAACTGGAGTCAGAGCTTTTTGACCTCGCAACTTCCTGTAAGGTTGTGTTGTGTTGTCGTGTTGCACCCTTGCAGAAGGCTGGAATTGTTGATCTGATAAAGAGCCGCACAGATGATATGACATTAGCCATAGGTGATGGGGCCAATGATGTGTCAATGATCCAAATGGCAGATGTTGGTGTTGGAATATGTGGGCAGGAAGGACGTCAAGCAGTGATGGCATCAGATTTTGCTATGGGACAATTTCAGTTCTTGAAAAGATTACTTCTTGTTCACGGGCACTGGAATTACCAGCGTGTTGGTTATTTAGTTCTGTACAACTTCTACCGCAATGCTGTCTTTGTGTTGATGTTATTTTGGTATATATTATGCACGGCTTTTTCTACAACTTCTGCATTAACAGACTGGAGTAGTGTATTCTATTCGGTGATATACACATCTGTACCCACAATTTTTGTTGGTATTTTGGACAAAGACTTGAGTCATAAGACACTCTTGCAGTATCCGAAACTGTATAGTACTGGTTACAGGCATGAAGCTTACAATATGCAATTATTTTGGATCACAATGATTGACACAGTATGGCAGAGCCTTGTTCTCTTTTACACACCGTTGTTCACCTATAAGGATAGTTCGATTGATATATGGAGCATGGGTAGCTTGTGGACAATTGCAGTTGTTATCCTTGTAAATGCACACCTGGCTATGGACATCAACCGTTGGCTATTAATTACTCATTATGCTGTCTGGGGATCCATAATCATTACATATGGTTGCGTGGTGATATTGGATTCCATACCCGTCTTTCCCAATTTCTGGACTATTTATCATCTGGCAAAGTCCCCTACGTATTGGATAACAATTTTGCTTATAATAATTGTGGCATTGCTACCTCGCTTTACTTGCAAAGTTGTTTGGCAAATCTTCTGGCCTTCAGATATCCAGATAGCTAGAGAAGCCGAGTTAATGAGAAGACGACATGATCGTTTGCAGTCAAGGCATCAAGGTTCCAGTTAA 3876 0.4156 MSSDQPLLSEPDLVVPPVIHHRHCKSGSRTSFFEAVAAAVESSPTSNHHREVVLAKDCSFHSAFSHNNTNSSGSICISSSSLTEVQNPDSEFRLECPTRERGRLRSWGAMELHDSNTAPFEISTASAVTAAPSRRIRHKSVQFDEQILHDDNARLIYINDPKKTNDKYEFTGNEIRTSRYTFITFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLCVTAIKDGYEDWRRHRSDNNENNRESLVLQSGDFRSKVWKKIQAGEVVKIFADETIPADMVLLGTSDPSGLAYIQTMNLDGESNLKTRYAKQETTSAVSSEVCDIAGIIRCEQPNRNIYEFTANMEFNGIKFSLSQSNIVLRGCQLKNTDWIIGVVVYAGQETKAMLNSAASPSKRSRLEGYMNRETLWLSIFLFIMCLVVALGMCLWLVRHKNQLDTLPYYRKRYINNGPEYGKKYKYYGIPMEAFFSFLSSVIVFQIMIPISLYITMELVRLGQSYFMIEDMHMYDASSGSRFQCRSLNINEDLGQIRYVFSDKTGTLTENKMEFRRASVHGDNYGNSLFAAEDSSAATDVIPKRRWKLKSEISVDPKLMTVLHKNPNRDERIVAHEFFLTLAACNTVIPILTDGEFSGCGTSESNGYAECIDYQGESPDEQALVSAASAYGYTLFERTSGHIVIDINGEKLRLDVLGLHEFDSVRKRMSVVIRFPDNVVKVLVKGADTSMFSILANGSESHNSLLHATHSHLTEYSSQGLRTLVVASRSLSDAELEEWQSRYGEASTALTDRASKLRQAAALIECNLNLLGATGIEDKLQEGVPEAIESLRQAGIKVWVLTGDKQETAISIGLSCKLLSADMQQIVINGTSEEECKNLLGDAIAKYGVRSSRRGHQNLNNKTNAQHGDLDISNGSKSMSLPKWNPGKEEETNTPLALIIDGNSLVYILEKELESELFDLATSCKVVLCCRVAPLQKAGIVDLIKSRTDDMTLAIGDGANDVSMIQMADVGVGICGQEGRQAVMASDFAMGQFQFLKRLLLVHGHWNYQRVGYLVLYNFYRNAVFVLMLFWYILCTAFSTTSALTDWSSVFYSVIYTSVPTIFVGILDKDLSHKTLLQYPKLYSTGYRHEAYNMQLFWITMIDTVWQSLVLFYTPLFTYKDSSIDIWSMGSLWTIAVVILVNAHLAMDINRWLLITHYAVWGSIIITYGCVVILDSIPVFPNFWTIYHLAKSPTYWITILLIIIVALLPRFTCKVVWQIFWPSDIQIAREAELMRRRHDRLQSRHQGSS 1291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01844 1291 Gene3D - 652 787 IPR023299 GO:0000166
Trre13g01844 1291 SUPERFAMILY Calcium ATPase, transmembrane domain M 170 1264 IPR023298 -
Trre13g01844 1291 CDD P-type_ATPase_APLT_Dnf-like 172 1157 - -
Trre13g01844 1291 FunFam Phospholipid-transporting ATPase 655 790 - -
Trre13g01844 1291 SFLD p-type atpase 527 1048 IPR044492 -
Trre13g01844 1291 SUPERFAMILY HAD-like 530 1042 IPR036412 -
Trre13g01844 1291 Pfam Phospholipid-translocating ATPase N-terminal 156 221 IPR032631 -
Trre13g01844 1291 Pfam Cation transport ATPase (P-type) 660 734 - -
Trre13g01844 1291 Pfam haloacid dehalogenase-like hydrolase 784 856 - -
Trre13g01844 1291 NCBIfam HAD-IC family P-type ATPase 967 1083 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre13g01844 1291 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 549 826 IPR023299 GO:0000166
Trre13g01844 1291 NCBIfam phospholipid-translocating P-type ATPase 170 1272 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Trre13g01844 1291 ProSitePatterns E1-E2 ATPases phosphorylation site. 545 551 IPR018303 -
Trre13g01844 1291 PRINTS P-type cation-transporting ATPase superfamily signature 543 557 - -
Trre13g01844 1291 PRINTS P-type cation-transporting ATPase superfamily signature 997 1016 - -
Trre13g01844 1291 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 151 1275 - -
Trre13g01844 1291 SUPERFAMILY Calcium ATPase, transduction domain A 253 395 IPR008250 -
Trre13g01844 1291 Gene3D - 232 398 - -
Trre13g01844 1291 Pfam Phospholipid-translocating P-type ATPase C-terminal 1025 1265 IPR032630 -
Trre13g01844 1291 Pfam E1-E2 ATPase 254 501 - -
Trre13g01844 1291 MobiDBLite consensus disorder prediction 896 918 - -
Trre13g01844 1291 SFLD C1.7: P-type atpase like 527 1048 - -
Trre13g01844 1291 Gene3D - 810 1037 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01844 Trre-Chr13 15703616 15709076 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01844 133 1274 Primary Pumps ATPases AT5G04930 57.093 0.0 1331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01844 K14802 - gmx:100789830 2090.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g01844 13 15703616 15709076 Trre13g01844 13 15703616 15709076 ECH