Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01843 ATGAGTTCTGATCAACCACTTCTTTCAGAACCAGATCTTGTTGTTCCTCCAGTCATTCATCATCGCCACTGCAAATCCGGATCCCGCACTTCCTTCTTTGAGGCAGTCGCGGCTGCGGTAGAGTCTTCTCCGACATCCAACCATCACCGGGAAGTTGTGTTGGCGAAAGATTGCAGCTTCCACTCTGCATTTTCCCACAATAATACTAACAGCAGTGGCAGCATTTGCATTTCATCATCCTCTTTAACAGAGGTTCAAAACCCTGATTCGGAGTTTCGTTTGGAATGCCCCACGCGGGAAAGGGGACGCCTGCGATCCTGGGGTGCAATGGAACTGCATGATTCAAATACTGCGCCCTTTGAAATTTCAACAGCTTCTGCAGTAACAGCAGCTCCATCTCGCAGGATTCGTCATAAAAGTGTGCAGTTTGATGAACAAATTTTACATGATGATAATGCTAGGTTGATCTATATAAATGATCCTAAGAAAACGAATGATAAGTATGAGTTTACTGGGAATGAGATCCGAACTAGTCGATACACTTTTATCACATTCTTGCCTAAGAATTTATTTATTCAGTTCCATAGGGTTGCTTATTTGTATTTCCTTGCTATTGCTGCACTCAATCAGCTTCCACCCTTAGCTGTATTTGGGAGGACAGTGTCCCTTTTTCCGCTTTTGTTTGTTCTTTGTGTTACTGCTATTAAGGATGGGTATGAGGATTGGAGGAGACATAGGTCCGATAACAATGAGAACAATCGTGAGTCTTTGGTTCTTCAGTCCGGTGATTTCCGGTCCAAGGTATGGAAAAAGATTCAGGCTGGTGAGGTCGTTAAGATCTTTGCTGATGAGACCATTCCTGCTGATATGGTTTTGTTGGGTACAAGTGATCCGAGTGGGCTTGCTTATATTCAGACAATGAATTTGGATGGAGAATCAAATTTGAAGACGAGGTATGCCAAGCAGGAAACGACTTCTGCAGTATCTTCGGAGGTTTGTGATATTGCTGGGATTATTAGATGCGAGCAGCCAAACCGGAATATTTATGAGTTCACAGCTAATATGGAGTTCAATGGAATTAAGTTTTCCCTTAGCCAGTCAAACATTGTCCTGAGAGGTTGCCAGCTGAAGAACACGGATTGGATAATTGGTGTTGTTGTTTATGCAGGGCAGGAAACAAAAGCCATGCTGAACAGTGCGGCTTCTCCTTCCAAGAGAAGCAGACTGGAAGGTTATATGAATAGAGAAACCCTTTGGTTGTCAATTTTTCTTTTTATCATGTGTTTGGTTGTGGCCCTTGGAATGTGTCTTTGGCTGGTACGTCACAAGAACCAGCTTGATACCTTGCCTTACTACAGAAAAAGATACATCAACAATGGCCCGGAATATGGAAAGAAATATAAGTATTATGGGATACCAATGGAAGCATTTTTCTCCTTTTTGAGTTCGGTTATAGTGTTCCAGATAATGATACCCATATCTCTTTACATCACAATGGAGTTGGTTCGATTGGGTCAGTCATACTTCATGATTGAAGACATGCATATGTATGACGCTAGCTCTGGATCAAGGTTTCAGTGTAGATCATTAAATATAAATGAAGATTTGGGTCAAATACGCTATGTATTTTCAGACAAGACAGGAACACTAACAGAAAACAAGATGGAATTCCGGAGGGCTAGCGTACATGGGGATAATTATGGGAACTCCTTGTTTGCTGCCGAGGATAGTTCAGCAACAGATGTTATTCCTAAACGGAGATGGAAACTCAAATCTGAAATTTCAGTTGATCCCAAACTAATGACCGTGTTGCATAAAAACCCAAATAGAGATGAAAGAATAGTTGCTCATGAGTTTTTTCTTACATTGGCTGCTTGTAATACTGTGATTCCTATACTTACTGATGGTGAATTTTCTGGTTGTGGAACAAGTGAATCAAATGGATATGCAGAGTGCATTGATTACCAGGGAGAATCCCCTGATGAACAAGCTCTAGTTTCTGCAGCCTCTGCATATGGATACACTCTTTTTGAGCGGACATCTGGACATATTGTTATTGACATCAATGGTGAGAAACTCAGATTGGACGTATTGGGCCTGCATGAGTTTGATAGTGTGCGAAAGAGAATGTCCGTTGTTATTCGGTTTCCTGACAATGTTGTAAAGGTGCTAGTCAAAGGAGCTGATACATCAATGTTTAGCATTTTGGCAAATGGCAGTGAGAGCCACAATAGCTTATTGCATGCAACGCACAGCCATTTGACTGAATATTCTTCGCAAGGTTTGCGCACCCTTGTAGTGGCCTCTAGAAGTCTTTCTGATGCTGAACTTGAGGAGTGGCAAAGCAGGTATGGAGAGGCAAGCACTGCCTTAACTGACCGAGCTAGTAAACTACGTCAAGCGGCAGCTCTTATAGAATGCAATTTAAATCTACTTGGAGCAACTGGAATTGAGGACAAGCTGCAAGAGGGTGTACCAGAAGCCATTGAGTCCCTACGGCAAGCTGGAATCAAGGTCTGGGTTCTTACTGGTGATAAACAAGAGACTGCGATTTCAATTGGTCTTTCCTGCAAGCTTCTTAGTGCAGATATGCAGCAAATTGTTATAAATGGCACTTCAGAGGAGGAATGCAAAAATCTTTTGGGTGATGCAATAGCTAAATATGGTGTGAGATCTTCAAGAAGAGGGCATCAGAATCTGAATAATAAAACCAATGCTCAACATGGTGATCTTGATATTTCCAATGGTTCAAAGTCAATGAGTTTGCCCAAGTGGAATCCAGGAAAGGAAGAAGAAACTAATACTCCATTGGCACTCATAATTGATGGGAACAGTTTGGTTTATATTTTAGAGAAAGAACTGGAGTCAGAGCTTTTTGACCTCGCAACTTCCTGTAAGGTTGTGTTGTGTTGTCGTGTTGCACCCTTGCAGAAGGCTGGAATTGTTGATCTGATAAAGAGCCGCACAGATGATATGACATTAGCCATAGGTGATGGGGCCAATGATGTGTCAATGATCCAAATGGCAGATGTTGGTGTTGGAATATGTGGGCAGGAAGGACGTCAAGCAGTGATGGCATCAGATTTTGCTATGGGACAATTTCAGTTCTTGAAAAGATTACTTCTTGTTCACGGGCACTGGAATTACCAGCGTGTTGGTTATTTAGTTCTGTACAACTTCTACCGCAATGCTGTCTTTGTGTTGATGTTATTTTGGTATATATTATGCACGGCTTTTTCTACAACTTCTGCATTAACAGACTGGAGTAGTGTATTCTATTCGGTGATATACACATCTGTACCCACAATTTTTGTTGGTATTTTGGACAAAGACTTGAGTCATAAGACACTCTTGCAGTATCCGAAACTGTATAGTACTGGTTACAGGCATGAAGCTTACAATATGCAATTATTTTGGATCACAATGATTGACACAGTATGGCAGAGCCTTGTTCTCTTTTACACACCGTTGTTCACCTATAAGGATAGTTCGATTGATATATGGAGCATGGGTAGCTTGTGGACAATTGCAGTTGTTATCCTTGTAAATGCACACCTGGCTATGGACATCAACCGTTGGCTATTAATTACTCATTATGCTGTCTGGGGATCCATAATCATTACATATGGTTGCGTGGTGATATTGGATTCCATACCCGTCTTTCCCAATTTCTGGACTATTTATCATCTGGCAAAGTCCCCTACGTATTGGATAACAATTTTGCTTATAATAATTGTGGCATTGCTACCTCGCTTTACTTGCAAAGTTGTTTGGCAAATCTTCTGGCCTTCAGATATCCAGATAGCTAGAGAAGCCGAGTTAATGAGAAGACGACATGATCGTTTGCAGTCAAGGCATCAAGGTTCCAGTTAA 3873 0.4154 MSSDQPLLSEPDLVVPPVIHHRHCKSGSRTSFFEAVAAAVESSPTSNHHREVVLAKDCSFHSAFSHNNTNSSGSICISSSSLTEVQNPDSEFRLECPTRERGRLRSWGAMELHDSNTAPFEISTASAVTAAPSRRIRHKSVQFDEQILHDDNARLIYINDPKKTNDKYEFTGNEIRTSRYTFITFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLCVTAIKDGYEDWRRHRSDNNENNRESLVLQSGDFRSKVWKKIQAGEVVKIFADETIPADMVLLGTSDPSGLAYIQTMNLDGESNLKTRYAKQETTSAVSSEVCDIAGIIRCEQPNRNIYEFTANMEFNGIKFSLSQSNIVLRGCQLKNTDWIIGVVVYAGQETKAMLNSAASPSKRSRLEGYMNRETLWLSIFLFIMCLVVALGMCLWLVRHKNQLDTLPYYRKRYINNGPEYGKKYKYYGIPMEAFFSFLSSVIVFQIMIPISLYITMELVRLGQSYFMIEDMHMYDASSGSRFQCRSLNINEDLGQIRYVFSDKTGTLTENKMEFRRASVHGDNYGNSLFAAEDSSATDVIPKRRWKLKSEISVDPKLMTVLHKNPNRDERIVAHEFFLTLAACNTVIPILTDGEFSGCGTSESNGYAECIDYQGESPDEQALVSAASAYGYTLFERTSGHIVIDINGEKLRLDVLGLHEFDSVRKRMSVVIRFPDNVVKVLVKGADTSMFSILANGSESHNSLLHATHSHLTEYSSQGLRTLVVASRSLSDAELEEWQSRYGEASTALTDRASKLRQAAALIECNLNLLGATGIEDKLQEGVPEAIESLRQAGIKVWVLTGDKQETAISIGLSCKLLSADMQQIVINGTSEEECKNLLGDAIAKYGVRSSRRGHQNLNNKTNAQHGDLDISNGSKSMSLPKWNPGKEEETNTPLALIIDGNSLVYILEKELESELFDLATSCKVVLCCRVAPLQKAGIVDLIKSRTDDMTLAIGDGANDVSMIQMADVGVGICGQEGRQAVMASDFAMGQFQFLKRLLLVHGHWNYQRVGYLVLYNFYRNAVFVLMLFWYILCTAFSTTSALTDWSSVFYSVIYTSVPTIFVGILDKDLSHKTLLQYPKLYSTGYRHEAYNMQLFWITMIDTVWQSLVLFYTPLFTYKDSSIDIWSMGSLWTIAVVILVNAHLAMDINRWLLITHYAVWGSIIITYGCVVILDSIPVFPNFWTIYHLAKSPTYWITILLIIIVALLPRFTCKVVWQIFWPSDIQIAREAELMRRRHDRLQSRHQGSS 1290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01843 1290 NCBIfam HAD-IC family P-type ATPase 966 1082 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre13g01843 1290 MobiDBLite consensus disorder prediction 895 917 - -
Trre13g01843 1290 Pfam E1-E2 ATPase 254 501 - -
Trre13g01843 1290 Pfam Phospholipid-translocating ATPase N-terminal 156 221 IPR032631 -
Trre13g01843 1290 Gene3D - 232 398 - -
Trre13g01843 1290 SUPERFAMILY HAD-like 530 1041 IPR036412 -
Trre13g01843 1290 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 549 825 IPR023299 GO:0000166
Trre13g01843 1290 FunFam Phospholipid-transporting ATPase 654 789 - -
Trre13g01843 1290 Pfam haloacid dehalogenase-like hydrolase 783 855 - -
Trre13g01843 1290 Gene3D - 809 1036 IPR023214 -
Trre13g01843 1290 Gene3D - 652 786 IPR023299 GO:0000166
Trre13g01843 1290 SUPERFAMILY Calcium ATPase, transmembrane domain M 170 1263 IPR023298 -
Trre13g01843 1290 SFLD p-type atpase 527 1047 IPR044492 -
Trre13g01843 1290 ProSitePatterns E1-E2 ATPases phosphorylation site. 545 551 IPR018303 -
Trre13g01843 1290 Pfam Phospholipid-translocating P-type ATPase C-terminal 1024 1264 IPR032630 -
Trre13g01843 1290 SUPERFAMILY Calcium ATPase, transduction domain A 253 395 IPR008250 -
Trre13g01843 1290 PRINTS P-type cation-transporting ATPase superfamily signature 543 557 - -
Trre13g01843 1290 PRINTS P-type cation-transporting ATPase superfamily signature 996 1015 - -
Trre13g01843 1290 CDD P-type_ATPase_APLT_Dnf-like 172 1156 - -
Trre13g01843 1290 Pfam Cation transport ATPase (P-type) 659 733 - -
Trre13g01843 1290 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 151 1274 - -
Trre13g01843 1290 NCBIfam phospholipid-translocating P-type ATPase 170 1271 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Trre13g01843 1290 SFLD C1.7: P-type atpase like 527 1047 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01843 Trre-Chr13 15703616 15709076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01843 133 1273 Primary Pumps ATPases AT5G04930 57.093 0.0 1329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01843 K14802 - gmx:100789830 2091.62