Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01842 ATGGAAAATATAGAAAATCTAGCTCATGGTCGTGGAAAGGTAATTGATGAGTTGTTAAGAGGTCGTGATCTAGCAAATCAACTTAGGCATATTCTCAATGAAAGTGTTGATATTGATCATAATAATAATGATTCAAATTCAACAACACCATTTGCAGCTGAAAATCTTCTAAAGGAAGTGCTTATGACTTTTACAAATTCACTTTTGTTCTTGAATAATAATTCTACTTCAGATGTCTCTGATGCTCAACTCACCAAATCTGAGGATTCTTTGGAGAGTAATTGCAAGAGTACTTCCATTGTTAAGGAACGAAGAGGTTGTTACAAAAGAAGAAAAGTTTCACAAACATGGGAGAAGGAATCTGAACAGCCAGTGGAAGATGGTCATCAATGGAGAAAGTATGGCCAAAAAAAGATCCTCCACATTGATTTCCCAAGGAACTACTATAGGTGCACTCACAAATATGATCAAGGTTGCAAAGCAACAAAACAAGTACAAAAAATTCAAGAAGAACCACTTCTTCACAAAACAACATACTATGGCCATCACACTTGTAGAGTCATACAAAACCCTGAGATCATAGTGGATTCACTTTCTCCTAATCATCACTCTTCCATGTTTCTTAGCTTTGACAACTCTTTCCCAACACCAACAAAACAAGATTGTCCTTTTCTCTCAACTTCTTCTCATCCATCATCAACATCATCATCAGTGAAAAGAGAGAAGTGCAAGGAAGAGATTGTTAATCATCCTCCTCCTCCTCCTCCTCCTTCATCTTCCCACAATGATTACCTCTCTGGACTCACTTTTGATGATTCAGAAAAACATGTCACACTATCATCAACACTTGATTCTCATGATCACTTGAGTGTCAATATTTCTGATATCTTGTACGATGATGTCCTCAATTGGCCTCTTTCTTGA 924 0.368 MENIENLAHGRGKVIDELLRGRDLANQLRHILNESVDIDHNNNDSNSTTPFAAENLLKEVLMTFTNSLLFLNNNSTSDVSDAQLTKSEDSLESNCKSTSIVKERRGCYKRRKVSQTWEKESEQPVEDGHQWRKYGQKKILHIDFPRNYYRCTHKYDQGCKATKQVQKIQEEPLLHKTTYYGHHTCRVIQNPEIIVDSLSPNHHSSMFLSFDNSFPTPTKQDCPFLSTSSHPSSTSSSVKREKCKEEIVNHPPPPPPPSSSHNDYLSGLTFDDSEKHVTLSSTLDSHDHLSVNISDILYDDVLNWPLS 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01842 307 ProSiteProfiles WRKY domain profile. 120 188 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g01842 307 MobiDBLite consensus disorder prediction 221 236 - -
Trre13g01842 307 SUPERFAMILY WRKY DNA-binding domain 123 186 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre13g01842 307 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 18 229 IPR044810 GO:0003700
Trre13g01842 307 SMART WRKY_cls 125 187 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g01842 307 MobiDBLite consensus disorder prediction 221 267 - -
Trre13g01842 307 Pfam WRKY DNA -binding domain 126 186 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g01842 307 Gene3D WRKY domain 107 187 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01842 Trre-Chr13 15676897 15678896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01842 13 208 WRKY Transcription Factor Family AT3G56400 39.048 2.24e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre13g01842 WRKY 2.3e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01842 - - gmx:100170682 335.495