Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre13g01842 | ATGGAAAATATAGAAAATCTAGCTCATGGTCGTGGAAAGGTAATTGATGAGTTGTTAAGAGGTCGTGATCTAGCAAATCAACTTAGGCATATTCTCAATGAAAGTGTTGATATTGATCATAATAATAATGATTCAAATTCAACAACACCATTTGCAGCTGAAAATCTTCTAAAGGAAGTGCTTATGACTTTTACAAATTCACTTTTGTTCTTGAATAATAATTCTACTTCAGATGTCTCTGATGCTCAACTCACCAAATCTGAGGATTCTTTGGAGAGTAATTGCAAGAGTACTTCCATTGTTAAGGAACGAAGAGGTTGTTACAAAAGAAGAAAAGTTTCACAAACATGGGAGAAGGAATCTGAACAGCCAGTGGAAGATGGTCATCAATGGAGAAAGTATGGCCAAAAAAAGATCCTCCACATTGATTTCCCAAGGAACTACTATAGGTGCACTCACAAATATGATCAAGGTTGCAAAGCAACAAAACAAGTACAAAAAATTCAAGAAGAACCACTTCTTCACAAAACAACATACTATGGCCATCACACTTGTAGAGTCATACAAAACCCTGAGATCATAGTGGATTCACTTTCTCCTAATCATCACTCTTCCATGTTTCTTAGCTTTGACAACTCTTTCCCAACACCAACAAAACAAGATTGTCCTTTTCTCTCAACTTCTTCTCATCCATCATCAACATCATCATCAGTGAAAAGAGAGAAGTGCAAGGAAGAGATTGTTAATCATCCTCCTCCTCCTCCTCCTCCTTCATCTTCCCACAATGATTACCTCTCTGGACTCACTTTTGATGATTCAGAAAAACATGTCACACTATCATCAACACTTGATTCTCATGATCACTTGAGTGTCAATATTTCTGATATCTTGTACGATGATGTCCTCAATTGGCCTCTTTCTTGA | 924 | 0.368 | MENIENLAHGRGKVIDELLRGRDLANQLRHILNESVDIDHNNNDSNSTTPFAAENLLKEVLMTFTNSLLFLNNNSTSDVSDAQLTKSEDSLESNCKSTSIVKERRGCYKRRKVSQTWEKESEQPVEDGHQWRKYGQKKILHIDFPRNYYRCTHKYDQGCKATKQVQKIQEEPLLHKTTYYGHHTCRVIQNPEIIVDSLSPNHHSSMFLSFDNSFPTPTKQDCPFLSTSSHPSSTSSSVKREKCKEEIVNHPPPPPPPSSSHNDYLSGLTFDDSEKHVTLSSTLDSHDHLSVNISDILYDDVLNWPLS | 307 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre13g01842 | 307 | ProSiteProfiles | WRKY domain profile. | 120 | 188 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Trre13g01842 | 307 | MobiDBLite | consensus disorder prediction | 221 | 236 | - | - | |
Trre13g01842 | 307 | SUPERFAMILY | WRKY DNA-binding domain | 123 | 186 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Trre13g01842 | 307 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 18 | 229 | IPR044810 | GO:0003700 | |
Trre13g01842 | 307 | SMART | WRKY_cls | 125 | 187 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Trre13g01842 | 307 | MobiDBLite | consensus disorder prediction | 221 | 267 | - | - | |
Trre13g01842 | 307 | Pfam | WRKY DNA -binding domain | 126 | 186 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Trre13g01842 | 307 | Gene3D | WRKY domain | 107 | 187 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre13g01842 | Trre-Chr13 | 15676897 | 15678896 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre13g01842 | 13 | 208 | WRKY Transcription Factor Family | AT3G56400 | 39.048 | 2.24e-38 | 135 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | WRKY | Trre13g01842 | WRKY | 2.3e-22 | CL0274 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre13g01842 | - | - | gmx:100170682 | 335.495 |