Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01835 ATGTTGAAATTCAGTAAAATATGTTTGTTTTTGAGTCTTTTTAGTTTGGTTTTAGTTTCAGTGTTTTCTGTTGATGATCCTGTTTTTAATGATGAAATAATGGGATTAATTGTGTTTAAAGCTGGTTTACAAGATCCTAATCATAAACTTTCTTCATGGAATGAAGATGATTATACACCTTGTAATTGGGAAGGTGTAAAATGTGATTCTTCAAACAATAGAGTTATTTCTATTGTTCTTGATGGTTTTTCTCTTTCAGGACACATTGATAGAGGCTTATTGAGATTACAGTTTCTTCAAACTCTTTCACTTTCTGGTAACAATTTTACTGGTTTCATAAACCCTGATCTTCCTAAACTTGGAAATTTACAAGTTGTTGATTTTAGTGGTAATAATCTTAAAGGGTCAATTCCTGAAGAGTTTTTTCAACAATGTGGATCTTTGAAAACTGTTAACTTTGCTAAGAATAATCTTACAGGTAAAATTCCTGATTCTCTTAGCTCATGTAACACTTTGGTAAATGTTAACTTTTCTTATAATCAAATTTATGGAAATTTGCCATCTGAGGTGTGGTTTTTGAGAGGATTACAATCACTTGATGTTTCGAGTAACTTGCTCGAAGGAGAAATTCCTAAAGGGATTCAAAACCTTTATGATTTGAGGGAGTTGAGTTTGAAGAAAAACCGATTTAGTGGTAAAATTCCCGAGGATATTGGTGGTTGCGTAGTTTTGAAATCACTTGATTTGAGTGGTAATTTTCTATCTGGTGGAATTCCTCAATCAATGCAAAGATTGAATTCTTGTAATTCTCTTAGTTTGCAAGGAAATTCATTCACAGGTAATGTTCCTGATTGGATTGGTGAGTTGAAATATCTAGAAATATTGGATCTTTCTGAAAATAGATTTTCTGGTTGGATTCCAAAGTCATTAGGAAATCTCGAAATGTTGCAAAGATTGAATTTTTCGAGGAATCAGTTGACAGGAAACTTGCCGGATTCAATGATGAACTGTACTAAGCTTTTAGCTCTTGACATAAGTCAAAATCATTTGGATGGTTATCTTCCTTCATGGATTTTTAGGAAGGATAATTATCACGGTCTCGAGGTTTTGGATTTGTCTTCCAATGGATTTTCTGGTGAACTTCCATCTAATATCGGTGGTCTTGTTAGTTTGAAAATCTTGAATTTGTCTACCAACTATTTCTCCGGTTCTATTCCTGTTGGTATAGGTGAACTCAAATCTTTATACATTGTTGACTTGAGTGAGAACTCGCTTAATGGAAGCATTCCTTTTGAAATAGAAGGTGCAATTTCACTCAGTGAATTGAGGCTACACAAGAATTCACTTGGTGGGAGAATTCCCGAACAAATCGCTAAGTGTTCATCTCTAACAACTTTGGTTCTTTCTCACAACAAGTTTACTGGTTGGATCCCTGCAGCCATTGCAAACCTAACCAATCTTCAGCATGTAGATTTGTCGTGGAATGAGCTCTCTGGTAGTCTACCAAAGGAGCTGACAAATCTTTCCAATCTTTTATCATTCAATGTGTCGTACAACCACCTTCAAGGTGAGTTACCGGTTGGTGGATTCTTCAACACCATCTCCTCTACATCTGTTACTGGTAATTCATTGTTGTGTGGTTCTGTTGTCAACCACTCCTGTCCCTCGGTTCATCCGAAACCTATTGTCTTGAATCCCAACTCTTCCGCTCCCAACTCCAGTGTTTCCTCGAAATATCATCGACACAAGATCATTCTTAGTATATCTGCTCTTATTGCTATTGGTGCAGCTGCTTTTATTGCAGTTGGCGTTGTGGCTATCACTTTCCTAAATATGCGCGCCCGTTCTGCAATGGAACGTTCTCCTGCTCCATTTGCGTTCTCCGGTGGCGATGACTATACAAATTCTCCGGAGAATGATCCGAACTATGGCAAACTTGTCATGTTTTCTGGTGATGCAGACTTTGCTGATGGAGCTCATAATCTCCTTAATAAAGAGAGTGAAATAGGCCGTGGTGGATTTGGAGTTGTTTATCGCACTTTCCTTCGAGACGGACATGCTGTTGCAATCAAGAAGCTGACAGTCTCAAGTTTGATCAAGTCTCAAGAAGAGTTCGAGAAGGAAGTGAAAAGGTTTGGGAAAATTCGGCACCAGAATCTTGTTGCACTCGAAGGTTATTATTGGACATCATCGTTGCAGCTTCTCATTTACGAGTACCTATCAAGTGGTAGCTTGCATAAGCTTCTGCACGACAATAGCAACAAAAACGTCTTATCTTGGCGACAAAGGTTCAACATTATTCTCGGCATGGCAAAAGGGTTGGCACATTTGCACGAAACGAACATAATCCACTATAATCTTAAATCAACCAATGTTCTCATTGACTCTTCCGGCGAGCCAAAGATCGGTGATTTCGGCCTGGTGAAGCTCTTACCGATGCTAGACCATTGTGTATTAAGCAGCAAAATTCAAAGTGCGCTCGGATACATGGCTCCTGAGTTTGCTTGCCGAACAGTTAAGATAACCGAGAAATGCGACGTGTACGGTTTCGGGATCCTTATTTTGGAGATAGTGACAGGAAAAAGACCTGTTGAATACATGGAAGATGATGTGGTGGTTCTATGTGACATGGTGAGGGGTGCATTGGAAGAAGGAAAAGTTGAACAATGTATTGATGAAAGGCTTTTAGGTAATTTTGCTGCTGAAGAAGCAATTCCTGTCATAAAACTGGGATTAATTTGTGCATCACAAGTTCCATCAAATAGGCCTGATATGAGTGAGGTTATCAACATTTTAGAGTTAATTCAGTGCCCTTCAGAAGGACAAGAGGAATTATTAGAATGA 2844 0.3822 MLKFSKICLFLSLFSLVLVSVFSVDDPVFNDEIMGLIVFKAGLQDPNHKLSSWNEDDYTPCNWEGVKCDSSNNRVISIVLDGFSLSGHIDRGLLRLQFLQTLSLSGNNFTGFINPDLPKLGNLQVVDFSGNNLKGSIPEEFFQQCGSLKTVNFAKNNLTGKIPDSLSSCNTLVNVNFSYNQIYGNLPSEVWFLRGLQSLDVSSNLLEGEIPKGIQNLYDLRELSLKKNRFSGKIPEDIGGCVVLKSLDLSGNFLSGGIPQSMQRLNSCNSLSLQGNSFTGNVPDWIGELKYLEILDLSENRFSGWIPKSLGNLEMLQRLNFSRNQLTGNLPDSMMNCTKLLALDISQNHLDGYLPSWIFRKDNYHGLEVLDLSSNGFSGELPSNIGGLVSLKILNLSTNYFSGSIPVGIGELKSLYIVDLSENSLNGSIPFEIEGAISLSELRLHKNSLGGRIPEQIAKCSSLTTLVLSHNKFTGWIPAAIANLTNLQHVDLSWNELSGSLPKELTNLSNLLSFNVSYNHLQGELPVGGFFNTISSTSVTGNSLLCGSVVNHSCPSVHPKPIVLNPNSSAPNSSVSSKYHRHKIILSISALIAIGAAAFIAVGVVAITFLNMRARSAMERSPAPFAFSGGDDYTNSPENDPNYGKLVMFSGDADFADGAHNLLNKESEIGRGGFGVVYRTFLRDGHAVAIKKLTVSSLIKSQEEFEKEVKRFGKIRHQNLVALEGYYWTSSLQLLIYEYLSSGSLHKLLHDNSNKNVLSWRQRFNIILGMAKGLAHLHETNIIHYNLKSTNVLIDSSGEPKIGDFGLVKLLPMLDHCVLSSKIQSALGYMAPEFACRTVKITEKCDVYGFGILILEIVTGKRPVEYMEDDVVVLCDMVRGALEEGKVEQCIDERLLGNFAAEEAIPVIKLGLICASQVPSNRPDMSEVINILELIQCPSEGQEELLE 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01835 947 Coils Coil 942 947 - -
Trre13g01835 947 ProSiteProfiles Protein kinase domain profile. 663 935 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01835 947 FunFam Leucine-rich repeat receptor-like protein kinase 29 186 - -
Trre13g01835 947 Pfam Leucine rich repeat 292 350 IPR001611 GO:0005515
Trre13g01835 947 Pfam Leucine rich repeat 438 497 IPR001611 GO:0005515
Trre13g01835 947 Pfam Leucine rich repeat 194 252 IPR001611 GO:0005515
Trre13g01835 947 Gene3D Phosphorylase Kinase; domain 1 648 739 - -
Trre13g01835 947 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 657 739 - -
Trre13g01835 947 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 304 935 - -
Trre13g01835 947 SUPERFAMILY Protein kinase-like (PK-like) 664 936 IPR011009 -
Trre13g01835 947 Pfam Protein kinase domain 664 871 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01835 947 FunFam Leucine-rich repeat receptor-like protein kinase PXC2 361 557 - -
Trre13g01835 947 Gene3D Ribonuclease Inhibitor 143 216 IPR032675 -
Trre13g01835 947 SUPERFAMILY L domain-like 46 356 - -
Trre13g01835 947 FunFam LRR receptor-like serine/threonine-protein kinase 287 360 - -
Trre13g01835 947 Gene3D Transferase(Phosphotransferase) domain 1 740 944 - -
Trre13g01835 947 FunFam Inactive leucine-rich repeat receptor-like protein kinase 187 284 - -
Trre13g01835 947 Gene3D Ribonuclease Inhibitor 266 557 IPR032675 -
Trre13g01835 947 SUPERFAMILY L domain-like 289 547 - -
Trre13g01835 947 CDD STKc_IRAK 669 935 - -
Trre13g01835 947 Pfam Leucine Rich Repeat 99 120 IPR001611 GO:0005515
Trre13g01835 947 Gene3D Ribonuclease Inhibitor 217 265 IPR032675 -
Trre13g01835 947 Gene3D Ribonuclease Inhibitor 33 142 IPR032675 -
Trre13g01835 947 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 740 941 - -
Trre13g01835 947 ProSitePatterns Protein kinases ATP-binding region signature. 669 692 IPR017441 GO:0005524
Trre13g01835 947 SMART LRR_typ_2 484 507 IPR003591 -
Trre13g01835 947 SMART LRR_typ_2 289 312 IPR003591 -
Trre13g01835 947 SMART LRR_typ_2 388 412 IPR003591 -
Trre13g01835 947 SMART LRR_typ_2 508 532 IPR003591 -
Trre13g01835 947 SMART LRR_typ_2 120 144 IPR003591 -
Trre13g01835 947 SMART LRR_typ_2 217 241 IPR003591 -
Trre13g01835 947 SMART LRR_typ_2 313 337 IPR003591 -
Trre13g01835 947 SMART LRR_typ_2 193 216 IPR003591 -
Trre13g01835 947 Pfam Leucine rich repeat N-terminal domain 30 69 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01835 Trre-Chr13 15602325 15605594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01835 11 943 Receptor kinase-like Gene Family AT5G01890 60.540 0.0 1134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Trre13g01835 PK_Tyr_Ser-Thr 3.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01835 - - mtr:11433630 1665.2