Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01828 ATGCCAAAGTTGAGTATGACCCTTAATGCTCCTTTAGGAAATTCAAATCCCTTTGGTAATAGTGTTGTTGGTGAAAAGCAACAAAGTAGTAAAACTTCAGCTCCAAATTATCTATCAGAGTCAGAGAAAAATGTGTCCATGGCATCTTCAATTCATGTTGCAAGACAATCACCTATAAGACGACGAAGGAAACACATATCTCCGCGTAATTTGCCTAAGATTACTGATCAAGAATTACAACAATTATCTGGAGATTTAAATTCCACAATTGTGCCATTATTTGAGAAAACATTGACTGCCAGTGACGTTGGTCGACTCGGTCGAATGGTTCTTCCAAAACCATGTGTTGAAACATATTTTCCTCCTATTTCTCAACCAGGGGGCATTTATTTACACATGGAAGATATGAAAGGGAAGAAATTGATGTTTAGGTTTAGATTTTGGCCAAATAATAATAGCAGAATATATGTTTTAGAAGGTGTACAACCTTGGATTCAGTCCATGCAATTGCAAGCTGGAGATTTTGTAACATTTAGCAGGATCGACCCTGAGGAGAGACTGATAATAGGGTTTCGAAAGGCATCAATTGCTTCTGCAGAGTTGCATGACATTACTATTTCTAAAGGCAAGAAAAGAGAAGAAATGCATCTGCCAAAAGAATTGGTTCCTAAGAAGAAAAGAAAATGTGACATTGGATCAAAAAGCAAGCAAGTTCTTAATAACCAAGATGCATTGATGCTGAAACTTACTTGGCAAGAAGCTCAACATTTTCTTCATCCATCCCCTACAGTTAATTCAAACATTATGGTCATTGAGAATCATGTTTTTGAAGAATATGAAGAACCACCTATCATTGCAAAGAGAGGTATATTCATAAATGGAATGAATGAGCAAAATGGAGGAAGTTGA 909 0.3641 MPKLSMTLNAPLGNSNPFGNSVVGEKQQSSKTSAPNYLSESEKNVSMASSIHVARQSPIRRRRKHISPRNLPKITDQELQQLSGDLNSTIVPLFEKTLTASDVGRLGRMVLPKPCVETYFPPISQPGGIYLHMEDMKGKKLMFRFRFWPNNNSRIYVLEGVQPWIQSMQLQAGDFVTFSRIDPEERLIIGFRKASIASAELHDITISKGKKREEMHLPKELVPKKKRKCDIGSKSKQVLNNQDALMLKLTWQEAQHFLHPSPTVNSNIMVIENHVFEEYEEPPIIAKRGIFINGMNEQNGGS 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01828 302 Pfam B3 DNA binding domain 94 194 IPR003340 GO:0003677
Trre13g01828 302 Gene3D - 72 198 IPR015300 -
Trre13g01828 302 SUPERFAMILY DNA-binding pseudobarrel domain 91 193 IPR015300 -
Trre13g01828 302 ProSiteProfiles B3 DNA-binding domain profile. 94 195 IPR003340 GO:0003677
Trre13g01828 302 SMART B3_2 94 195 IPR003340 GO:0003677
Trre13g01828 302 CDD B3_DNA 92 193 IPR003340 GO:0003677
Trre13g01828 302 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 4 293 - -
Trre13g01828 302 MobiDBLite consensus disorder prediction 1 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01828 Trre-Chr13 15552455 15554615 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01828 2 293 B3 DNA Binding Superfamily AT4G32010 45.373 1.91e-86 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre13g01828 B3 1.4e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01828 K09287 - tpra:123891930 536.954