Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01827 ATGGGGTGCTTCACTGTATTGAAGAGCAAGAAGAAGAAGTCTGATTCGTTTGCTTATGTAAAACGCATAAACCATAACGATCATGCGCCTTCAGTACTTCCTGAACCTCAAACTCATACTCGTTCGCTACAGTCTGCACCTCCTAGTTTTAGGACCAGAGTGAAACCCAATCAACCTGTTAATAAAGTCACTAACAATAGAACACGGGCATTATCTGCTCCTTCAACTCTTGATGCAGCAGATCAAGATGCTTTAACCTCGATTGAGTATGAGGAACAAGAAGAATCAAAATACCGAGGAGGAGGATCAATGAAGGAGCAGCGTTCTTCTAGTCCACAACCTTTACCACTACCATCTCCTCAGGGATGTAGTTCACTGAAGACTATTGGCAGCTTTAAGATGGGGACTGCTAGTGTTCCTCTACATGCTTCTGGACCTTTGCCACTTCCACCAACTGGTTCACTTCGGAACTTTCCGTATGAGGAAGTTGCTGCTGCTTGCCACAATTTCTCTTCTGATCGGTGCATGTCAGAATGTCTTTCGTCTACAATATACAAAGCTTACTTTGATGATGATCCTTCAAGTGCAAAGAAGTTTGAAGCCACTGTCACACGCCTTCACCCATCACCGCAGGGCTTGAAGGATTTCATTAACGAGGTCAATACTCTTGCAACTTTGCAACATCCAAACCTCTGTAAACTGCTAGGATTTCATGCTCGTGATGGTTCAGAACATAGAATGTTGGTCTATGAGAGGCTATACCATGGAAGCTTGGATCGCCTGTTGTATGGTAGATCTGATGGACCATCCATTGATTGGAATACAAGAATGAAAATTGCAATGTGTGCTGCACAGGGTCTTACTTTCTTGCATGAAGAAGGGCCTTTTCAGGCAATGTATAATGAATTCTCGACAGCCAACATACAGATTGACAAAGATTTCAGTGCCAAGCTTTCCGGATATGGTTGTGTTGGACATATTCCCGAGGAAGAGATTTCCAGCAGTTCATCTGCTGTTGGAAACCTATCAATGGAGACACTGGAGAAAGGAATGCTGACACCGAAGAGCAATGTGTGGAGCTTTGGAATTTTTCTTTTGGAGTTACTTACTGGAAGAAAGAATCTCGATAGTCGTCACCCTAAGGAAGAGAGGAATTTAGTCAAATGGAGTAGGCCTTTCCTAGCTGATGATTACCGTTTATCGTTGATCATGGACCCTCAACTTAAAGGTCGATTTCCTTCCAAAGCAGCAAGAACGATAGCCGACATTGCACAAAGATGCCTACAAAAGGAGCCATCGGATAGACCCACCATGAGAATTGTTGTTGAGCATCTCAAAACAATACAGGATTTGAAATACTCTTGCAGGTTCCCACTCCAAGAACCAGCGCCATTATCCGGAAAAGAAATGTCAAGATCACCAAGTCTTAATGGTATCGTCTGCCCTGCGCCAAGGTTGAGTTTTTCTCCATCACGGCCATCAGTAGCTCCGTTATCTGTTTCGCCTCAGAGATGGTCCAGCGTGCCCGTCCTTCCACCTCGAGCTTGTTCTTCTATGGAAGAACTCGATAGGCAAGAAAGCCGTAAATCATCTTCAGCCTCTAGGAGGGCTAGTGTTGAAGGATTTTGA 1629 0.442 MGCFTVLKSKKKKSDSFAYVKRINHNDHAPSVLPEPQTHTRSLQSAPPSFRTRVKPNQPVNKVTNNRTRALSAPSTLDAADQDALTSIEYEEQEESKYRGGGSMKEQRSSSPQPLPLPSPQGCSSLKTIGSFKMGTASVPLHASGPLPLPPTGSLRNFPYEEVAAACHNFSSDRCMSECLSSTIYKAYFDDDPSSAKKFEATVTRLHPSPQGLKDFINEVNTLATLQHPNLCKLLGFHARDGSEHRMLVYERLYHGSLDRLLYGRSDGPSIDWNTRMKIAMCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCVGHIPEEEISSSSSAVGNLSMETLEKGMLTPKSNVWSFGIFLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDYRLSLIMDPQLKGRFPSKAARTIADIAQRCLQKEPSDRPTMRIVVEHLKTIQDLKYSCRFPLQEPAPLSGKEMSRSPSLNGIVCPAPRLSFSPSRPSVAPLSVSPQRWSSVPVLPPRACSSMEELDRQESRKSSSASRRASVEGF 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01827 542 MobiDBLite consensus disorder prediction 492 506 - -
Trre13g01827 542 PANTHER OS01G0588500 PROTEIN-RELATED 97 449 - -
Trre13g01827 542 MobiDBLite consensus disorder prediction 25 126 - -
Trre13g01827 542 MobiDBLite consensus disorder prediction 31 82 - -
Trre13g01827 542 Gene3D Phosphorylase Kinase; domain 1 151 251 - -
Trre13g01827 542 SUPERFAMILY Protein kinase-like (PK-like) 149 457 IPR011009 -
Trre13g01827 542 MobiDBLite consensus disorder prediction 519 533 - -
Trre13g01827 542 ProSiteProfiles Protein kinase domain profile. 170 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01827 542 Gene3D Transferase(Phosphotransferase) domain 1 253 456 - -
Trre13g01827 542 MobiDBLite consensus disorder prediction 492 542 - -
Trre13g01827 542 Pfam Protein tyrosine and serine/threonine kinase 183 445 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01827 Trre-Chr13 15549139 15551455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01827 149 449 Receptor kinase-like Gene Family AT4G02010 37.987 5.13e-56 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-II Trre13g01827 PK_Tyr_Ser-Thr 2.6e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01827 - - gmx:100809117 926.006