Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01819 ATGAAACGCCGTTTTCTCGACACAGAAGTGAGTATGCCACCATCATACAACAACAACAACACAAATGATTCATTCATCAACGTCGAAAATTTCGACACAAACATGGTGATTATATTAGCAGCACTCTTATGTGCATTAATTTGTGCTCTAGGATTAAACACCATAGCTCGCTGCGCGATGCGATGTAACAGAGGATTCTCCGAAGAAACACCGGAACAAGCAACAACAAGGTTGAACAAAACAGGGTTGAAAAAGTGTGAACTGAGTCAAATTCCGGTGACAGTTTACCATACCGGAGAAAATATTCCGGTGACTGAGTGTCCCATTTGTTTAGGAGAGTTTGAGAATGGAGACAGAGTTCGAATGTTGCCAAAATGTAATCACGGGTTTCATGTTATGTGTATTGACACGTGGTTAGTGTCACATTCTTCATGTCCCAATTGTCGAAAATCACTTCTTGTTGAGAAGGAATCCAAGGTTGTTTGTTCTGATGAGGTTGCCGGAGATGGGTTGCCGGCGGTGATGGTTGAAGTGGAAGAAAGTTGA 546 0.4212 MKRRFLDTEVSMPPSYNNNNTNDSFINVENFDTNMVIILAALLCALICALGLNTIARCAMRCNRGFSEETPEQATTRLNKTGLKKCELSQIPVTVYHTGENIPVTECPICLGEFENGDRVRMLPKCNHGFHVMCIDTWLVSHSSCPNCRKSLLVEKESKVVCSDEVAGDGLPAVMVEVEES 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01819 181 CDD RING-H2_EL5-like 106 149 - -
Trre13g01819 181 SMART ring_2 107 148 IPR001841 -
Trre13g01819 181 Pfam Ring finger domain 106 149 IPR001841 -
Trre13g01819 181 PANTHER RING-H2 FINGER PROTEIN ATL78 9 164 IPR044602 GO:0016567|GO:0016740
Trre13g01819 181 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 153 IPR013083 -
Trre13g01819 181 SUPERFAMILY RING/U-box 92 154 - -
Trre13g01819 181 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Trre13g01819 181 SMART FANCL_C_2 103 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01819 Trre-Chr13 15519062 15519607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01819 1 163 C3H Transcription Factor Family AT3G10910 51.744 1.72e-53 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01819 K19040 - gmx:100810195 235.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g01819 13 15519062 15519607 Trre13g01819 13 15519062 15519607 ECH