Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01810 ATGTACAAGGGGAGATTTTGTACTTCTGGTGGGATTAAGGCCCCCCTTGGATATGTTGAAACTGATCCATCGGGTCGATATGGTCGATTCAAAGATATTCTTGGCAGAGGAGCTATGAAAACTGTATACAGAGCATTTGATGAGTTCCTTGGGATTGAAGTTGCTTGGAACCAAGTCAAACTTGGTGATGTTTCTCATTCACCGGATCAACTTCAACGTCTTTATTCGGAAGTTCATCTCCTTAAGAACCTCAACCATAAGTCCATGATGATCTTCTATGGTTCTTGGATCGATATCAATGGCAAAACCTTCAACTTCATCACTGAATTGTTCACCTCCGGCACCCTTAGAGAGTATAGGCAAAAGTATAAGAAAGTAGATATTCGAGCATTGAAGAATTGGACACGCCAGATTCTAAGTGGTTTGGAGTATTTACACAACAATAATCCTCCTGTGATACATAGAGACCTCAAATGTGATAATATATTTGTCAATGGCCATAAAGGAGAGATTAAGATTGGTGACTTAGGTCTTGCAGCTATACTTTGTAGATCACAAGTTGCTCAAAGTGTCATAGGTACTCCGGAGTTCATGGCACCAGAATTGTACGAAGAGAAATACAATGAACTTGTAGATATATATTCTTTTGGGATGTGTATGATAGAGATGTTTACACTTGAGTTTCCATACAGCGAGTGCTCAAATCCAGCTCAAATATACAAGAAAGTAACCGCGGGGAAGCTACCAAATGCATTTTTCAGAATCAAAGATTTAGAAGCACAAAGGTTTGTGGGAAGATGTTTAGCACATGTCTCAAAGAGACCATCAGCAAAAGAACTATTATTGGACCCATTTTTAGCCACAGAACAACTTGAATTGTCATTGCCAAACACAACATTATCTACAAAGCAAACAAGTAGAAATATGACCATCACTGGGTCCCTAAATGAAGAAGATAACACAATTTTTCTTAAAGTGCGGATATCTGATGAAACAGGGCAAACAAGGCATATATTCTTTCCATTTGACACAACAAATGACACTGCTATTAAGGTGGCAATGGAGATGGTAGAAGAACTTGAAATTAGTCACTTGGATCCATTAGAGATAGCTACAATGATAGATAATGAGATATCAACATTATTTCCAACTTGGATGGGTACTCATGGTAAGTGTGAGCATCAACTACAACATAGCTTTAACTTTGAAGAAGATGATGATGAGGATGTTAATAACCACGGTCCTTTTGTCTTTTCAACATCTTGTCCTTCTTCACCTCATGATTCTCTCACCAAGTCTATCTCTAAGACCCACTTCTGTGGGAAGCATGGCATGTTTCCTCAAGAATGGAATCAAGATTCATTTATTAATGATGATGGAAGCTCTCCAAGCTCAATGAACTCCTACAAGTGTTCAAATATCCAATATCATGAAGATGAACATTGTCCAACAATATTAGAAGAAGCCAGAGCCAAGCATAACAATCTAAAATGCACTAGATCATGTCAAATAGAAGAGGGAGAAACAAGTAATTTCACCAAACAATTTTTGTACCCGAAAATGGACTCCTGTGGTGGTTGTAGATGTGGTGGTAGCCGTGGGTCGAGCCACCACAAATTGTCGAGTAAAACAAAGAATCGTTTAAACATGGATGAACATAGAAGCTTGCAACTTCAACGATCGCAATTATTGGAGGAGGTGTACCGGAGACAGATGTTCAACACAATTGCCACCATGGAGGGAATTGGATTTCAATATCCGGATGGACGTCGTACTCGTTGA 1782 0.39 MYKGRFCTSGGIKAPLGYVETDPSGRYGRFKDILGRGAMKTVYRAFDEFLGIEVAWNQVKLGDVSHSPDQLQRLYSEVHLLKNLNHKSMMIFYGSWIDINGKTFNFITELFTSGTLREYRQKYKKVDIRALKNWTRQILSGLEYLHNNNPPVIHRDLKCDNIFVNGHKGEIKIGDLGLAAILCRSQVAQSVIGTPEFMAPELYEEKYNELVDIYSFGMCMIEMFTLEFPYSECSNPAQIYKKVTAGKLPNAFFRIKDLEAQRFVGRCLAHVSKRPSAKELLLDPFLATEQLELSLPNTTLSTKQTSRNMTITGSLNEEDNTIFLKVRISDETGQTRHIFFPFDTTNDTAIKVAMEMVEELEISHLDPLEIATMIDNEISTLFPTWMGTHGKCEHQLQHSFNFEEDDDEDVNNHGPFVFSTSCPSSPHDSLTKSISKTHFCGKHGMFPQEWNQDSFINDDGSSPSSMNSYKCSNIQYHEDEHCPTILEEARAKHNNLKCTRSCQIEEGETSNFTKQFLYPKMDSCGGCRCGGSRGSSHHKLSSKTKNRLNMDEHRSLQLQRSQLLEEVYRRQMFNTIATMEGIGFQYPDGRRTR 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01810 593 SMART serkin_6 28 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01810 593 Pfam Protein kinase domain 31 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01810 593 CDD STKc_WNK 26 286 - -
Trre13g01810 593 ProSiteProfiles Protein kinase domain profile. 28 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01810 593 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
Trre13g01810 593 Gene3D Phosphorylase Kinase; domain 1 14 109 - -
Trre13g01810 593 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 18 568 - -
Trre13g01810 593 Gene3D Transferase(Phosphotransferase) domain 1 111 292 - -
Trre13g01810 593 FunFam probable serine/threonine-protein kinase WNK9 111 291 - -
Trre13g01810 593 FunFam Probable serine/threonine-protein kinase WNK1 13 109 - -
Trre13g01810 593 SUPERFAMILY Protein kinase-like (PK-like) 30 315 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01810 Trre-Chr13 15420101 15424271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01810 16 407 MAP Kinase Kinase Kinase AT3G51630 64.183 0.0 544
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Trre13g01810 Pkinase 8.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01810 K08867 - gmx:100272206 781.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g01810 13 15420101 15424271 Trre13g01810 13 15420101 15424271 ECH
Trre13g01810 13 15420101 15424271 Trre7g00820 7 5455534 5461366 PCT