Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01806 ATGGCAGAAGAAACACCAATTCAAACACAAAACGAGTCAAAACGCGTCGTTTTGTTCGGTAAATATGAAGTTGGAAGATTATTGGGCGTTGGTGCATCTGCGAAGGTGTATCACGCGACGAACGTTGAAAACGGGAAGAGCGTGGCGGTGAAAGTCATAAGCAAGAAAAAACTCAGCAATGGAAGCTTCGCCGAGAACATTGAACGCGAGATCTCAATTCTCCGCCGTCTCCACCACCCTAACATCATCGACCTGTTCGAAGTCCTTGCATCTAAGAACAAAATTTACTTCATCGTTGAATTCGCCGCCGCCGGCGAACTCTTCGAAGAAGTAGCCGGCAAAGAAAAGCTTACTGAAGACCATGCTAGAAGATACTTCCGGCAACTCATCTCCGCCGTGAAACACTGTCACTCTCTCGGCGTTTTCCATCGCGATCTTAAACTCGATAATCTCTTACTTGACGAGAATGATAATCTCAAAGTAACGGATTTCGGTTTAAGCGCTGTTAAAAACCAGATCCGACCCGACGGTTTACTTCACACCGTTTGTGGTACACCGTCCTACGTGGCACCGGAGATTCTCGCGAAGAAAGGCTACGACGGTGCAAAAGCTGATATATGGTCATGCGGCGTCGTTTTATTTGCTCTTACTACTGGATATTTACCGTTCAATGATTATAATGTTACCGTGCTTTATAGAAAAATTTACCGCGGTCAATTTCGTTTACCGAAATGGATATCTTGTGATCTGAAGAATCTCTTATCACGTTTATTGGATACAAATCCTAAGACAAGGATAACCGTTGATGAGATTCTCGAAGACCCGTGGTTCAAATCGGGTGGATTTAAGTTGGACCGGGTTTTAGTCAAATGTGAGGTGGAGGAGGAGAATCGAACCGGGTTTAAACCAATGAACGCATTCGATTTAATATCTTTTTCAACCGGGTTGGATATGTCGGGTATGTTCGAGGAAAATGACAGGTCGGGTTTAGTCAAACGGGTTGTTTCGGCGGAAGTGCCGGGGAGGATTTTGGAGAGGGTGGTGGAGGTGGTGAAGGGGACAAAAGTGGTGGTGAAAATGTTGGAGAATTGTGGTGGAGCAAAGTTGGAAGGGCAAGAAGGTAATTTGATTGCTCTTGTTGTGGTTTACCGGTTAACGGATGAGTTGGTTGTAGTTGAAATAAAGAAGCGTGGAAAATTGGAAGAATGTGGCGCGCAATTGTGGAAAAATAAATTGATACCTTTGCTTGTTGAGTTGGCTCAGGAACAGGAATTACCGGTTTCTCGGTGA 1290 0.4481 MAEETPIQTQNESKRVVLFGKYEVGRLLGVGASAKVYHATNVENGKSVAVKVISKKKLSNGSFAENIEREISILRRLHHPNIIDLFEVLASKNKIYFIVEFAAAGELFEEVAGKEKLTEDHARRYFRQLISAVKHCHSLGVFHRDLKLDNLLLDENDNLKVTDFGLSAVKNQIRPDGLLHTVCGTPSYVAPEILAKKGYDGAKADIWSCGVVLFALTTGYLPFNDYNVTVLYRKIYRGQFRLPKWISCDLKNLLSRLLDTNPKTRITVDEILEDPWFKSGGFKLDRVLVKCEVEEENRTGFKPMNAFDLISFSTGLDMSGMFEENDRSGLVKRVVSAEVPGRILERVVEVVKGTKVVVKMLENCGGAKLEGQEGNLIALVVVYRLTDELVVVEIKKRGKLEECGAQLWKNKLIPLLVELAQEQELPVSR 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01806 429 FunFam CAMK family protein kinase 17 299 - -
Trre13g01806 429 SUPERFAMILY Protein kinase-like (PK-like) 18 305 IPR011009 -
Trre13g01806 429 SMART serkin_6 22 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01806 429 CDD CIPK_C 305 416 - -
Trre13g01806 429 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 10 397 - -
Trre13g01806 429 ProSiteProfiles NAF domain profile. 299 323 IPR018451 GO:0007165
Trre13g01806 429 Pfam NAF domain 303 359 IPR004041 GO:0007165
Trre13g01806 429 ProSitePatterns Protein kinases ATP-binding region signature. 28 51 IPR017441 GO:0005524
Trre13g01806 429 FunFam Aurora kinase A 14 105 - -
Trre13g01806 429 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Trre13g01806 429 Pfam Protein kinase domain 22 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01806 429 Gene3D Kinase associated domain 1, KA1 304 421 - -
Trre13g01806 429 Gene3D Transferase(Phosphotransferase) domain 1 13 303 - -
Trre13g01806 429 ProSiteProfiles Protein kinase domain profile. 22 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01806 Trre-Chr13 15331272 15332561 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01806 1 424 CBL-interacting serine-threonine protein kinases AT5G01820 54.292 2.60e-157 450
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Trre13g01806 Pkinase 5.5e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01806 - K12761 gmx:100810319 561.607