Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01803 ATGGAACAAAAGGGAAGTGTGTTGATGCAAAAATATGAGTTGGGAAGATTATTAGGCCAAGGAACGTTTGCGAAGGTCTACCATGCTAGGAACCTTGTAACTGGCGTGAATGTGGCCATTAAGGTTGTTGATAAAGAAAAGGTTTTGAAAGTCGGGATGGTTGATCAGATTAAGCGTGAAATTTCAGTGATGAGATTAGTAAGACACCCAAATGTGGTCGAGCTTTATGAGGTAATGGCGACTAAAACCAAAATTTTCATTGTCATGGAGTATGCAAAAGGTGGCGAGCTCTTCAACAAGATAGCTAAAGGAAAGCTCAAGGTTGACGTTGCTAGGAGATATTTTCAGCAGCTGATTAGTGCAGTCGACTTCTGCCACAGCAGGGGTGTGTATCATCGAGATTTGAAACCCGAAAATCTACTATTGGATGAAAATGATAATTTGAAGGTTTCGGATTTTGGCTTGAGTACCCTTTCTGAATCTAAGTGCCAGGATGGATTGCTTCACACTACATGTGGTACGCCTGCGTATGTTGCTCCTGAAGTGATAAACCGAAAAGGCTATGAGGGATGCAAAGCTGATATTTGGTCGTGCGGCGTAATCTTGTTTGTTCTATTGGCTGGTTATCTTCCATTCCATGATCAAAATCTGATGGAGATGTACAGGAAAATCGGTAAAGGGGAAGTCAAATTTCCTAAATGGTTTGCACTAGAGGTTCGCCGGTTGTTGTCCAGAATATTGGATCCAAATCTAAAGACTCGGATATCTATGGCCAAGATCATGGAAAATTCTTGGTTTAAAAAGGGGTTAGAGAAGCCGATTGTTATTGATATAAAAAAAAATGACCTAGCATCTCTGCACACTGATGGAGTGTTCGAAGTGTCCGAGAACGGCAGTGATTCTAATACGGAATCAAAACAACAACAGGACAAACCCTGTAACAACTTAAACGCCTTTGATATCATCTCCTTCTCGTCTGGTTTTGACTTATCCAGCTTGTTCGAAGACACAATCCAAAAGAAAGAGATGCGGTTTACGTCTAACAAGCCAGCTTCGATTATAATCTCTAAGTTCGAAGAAATTTGCAAGTGTCTTCGCTTGAAAGTTACAAAAAAAGATGGAGGTTTATTGAAGCTGGAAAGTTCAAAGGAAGGAAGGAAAGGGACTCTGAATATTGATGCCGAAATTTTCGAGATTACACCTCTCTTCCATCTCGTGGAACTTAAGAAGTCCGAGGGCGATACAGTGGAGTATCAGAAGCTTTTGCAACAGGAGATTAGACCAGCACTTAAGGACATTGTGTGGAATTGGCAAGGAGAAAAACCTCAGGAACTCCAACATGAAGCAGTGCTGGAGGAGCAACCAACAACCATCTCGTACTGA 1383 0.415 MEQKGSVLMQKYELGRLLGQGTFAKVYHARNLVTGVNVAIKVVDKEKVLKVGMVDQIKREISVMRLVRHPNVVELYEVMATKTKIFIVMEYAKGGELFNKIAKGKLKVDVARRYFQQLISAVDFCHSRGVYHRDLKPENLLLDENDNLKVSDFGLSTLSESKCQDGLLHTTCGTPAYVAPEVINRKGYEGCKADIWSCGVILFVLLAGYLPFHDQNLMEMYRKIGKGEVKFPKWFALEVRRLLSRILDPNLKTRISMAKIMENSWFKKGLEKPIVIDIKKNDLASLHTDGVFEVSENGSDSNTESKQQQDKPCNNLNAFDIISFSSGFDLSSLFEDTIQKKEMRFTSNKPASIIISKFEEICKCLRLKVTKKDGGLLKLESSKEGRKGTLNIDAEIFEITPLFHLVELKKSEGDTVEYQKLLQQEIRPALKDIVWNWQGEKPQELQHEAVLEEQPTTISY 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01803 460 FunFam Non-specific serine/threonine protein kinase 2 311 - -
Trre13g01803 460 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 6 432 - -
Trre13g01803 460 CDD STKc_SnRK3 11 265 - -
Trre13g01803 460 SUPERFAMILY Protein kinase-like (PK-like) 8 267 IPR011009 -
Trre13g01803 460 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01803 460 ProSiteProfiles NAF domain profile. 311 335 IPR018451 GO:0007165
Trre13g01803 460 FunFam Non-specific serine/threonine protein kinase 311 435 - -
Trre13g01803 460 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01803 460 Gene3D Kinase associated domain 1, KA1 310 436 - -
Trre13g01803 460 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Trre13g01803 460 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01803 460 Gene3D Phosphorylase Kinase; domain 1 3 91 - -
Trre13g01803 460 Pfam NAF domain 314 371 IPR004041 GO:0007165
Trre13g01803 460 Gene3D Transferase(Phosphotransferase) domain 1 92 272 - -
Trre13g01803 460 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Trre13g01803 460 CDD CIPK_C 317 431 - -
Trre13g01803 460 FunFam Non-specific serine/threonine protein kinase 3 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01803 Trre-Chr13 15279203 15280585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01803 1 443 CBL-interacting serine-threonine protein kinases AT5G58380 66.447 0.0 614
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Trre13g01803 Pkinase 5.2e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01803 K07198 - gmx:100803787 699.508