Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01796 ATGATCCTTCCAATCACCAAAGTTAATTTTTTCTTACTCTTTTGCTTTATTGGCACAATTTCAGCTCAATTATCCCCTGACTTTTATGACAGAACATGTCATCATTTGCTTCACACCATTAAATCAGAAATAGTTCTTGCTGTGCACCATGACGCTCGCATGGGGGCCTCTCTACTACGTCTTCATTTTCATGATTGTTTTGTTCAAGGATGTGATGCATCAGTACTGTTGGACGATACATCAAGTTTTACAGGTGAAAAATCAGCATTTCCAAATGCTAATTCACTCAGAGGCTTTGATGTAATAGACAGAATAAAGTCTAAAGTAGAGAAGTTATGCCCCAATACAGTCTCTTGTGCTGATATTCTTGCTGTGGCAGCAAGAGACTCAGTTGTTGCTCTTGATGGGCCTAGTTGGAGTGTTCCATTGGGCCGAAGAGATTCAACCACAGCAAGTTTAAATTCAGCTAACTCAGACTTGCCAGCTCCCTTTTCTGATTTAAGTGCCCTAACTAATGCTTTCTCCAACAAAGGTTTTACAGTTAGTGAAATGGTTGCTCTTTCAGGTGGTAATTTAAATCTATCACCACTTGACACCACCACTCCAAACAAATTTGACAATGCTTATTTCAAGAACTTGCAAAATCTAAAGGGTCTCTTACACTCTGATCAAGTGCTTTTCGATGGATCCACAAATGCACAAGTTAATTTTTATGCTAACAGCCATTCAAGTTTATTTAGAACTGATTTTGCCAATGCAATGTTCAAAATGGCGAACCTTAGCCCACTTACTGGATCTAGTGGTCAGATTAGAAAATTCTGTGGGAGAGTCAACTAA 837 0.3883 MILPITKVNFFLLFCFIGTISAQLSPDFYDRTCHHLLHTIKSEIVLAVHHDARMGASLLRLHFHDCFVQGCDASVLLDDTSSFTGEKSAFPNANSLRGFDVIDRIKSKVEKLCPNTVSCADILAVAARDSVVALDGPSWSVPLGRRDSTTASLNSANSDLPAPFSDLSALTNAFSNKGFTVSEMVALSGGNLNLSPLDTTTPNKFDNAYFKNLQNLKGLLHSDQVLFDGSTNAQVNFYANSHSSLFRTDFANAMFKMANLSPLTGSSGQIRKFCGRVN 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01796 278 PRINTS Plant peroxidase signature 182 194 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre13g01796 278 PRINTS Plant peroxidase signature 57 77 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre13g01796 278 PRINTS Plant peroxidase signature 33 52 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre13g01796 278 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre13g01796 278 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre13g01796 278 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre13g01796 278 CDD secretory_peroxidase 23 277 IPR033905 GO:0004601|GO:0042744
Trre13g01796 278 SUPERFAMILY Heme-dependent peroxidases 23 278 IPR010255 GO:0004601|GO:0006979|GO:0020037
Trre13g01796 278 Gene3D Peroxidase, domain 2 193 257 - -
Trre13g01796 278 ProSitePatterns Peroxidases active site signature. 55 66 IPR019794 GO:0004601
Trre13g01796 278 Gene3D - 27 160 - -
Trre13g01796 278 PRINTS Haem peroxidase superfamily signature 198 213 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre13g01796 278 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre13g01796 278 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre13g01796 278 PRINTS Haem peroxidase superfamily signature 55 69 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre13g01796 278 PANTHER PEROXIDASE 72-RELATED 192 276 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre13g01796 278 ProSiteProfiles Plant heme peroxidase family profile. 23 278 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre13g01796 278 Pfam Peroxidase 43 241 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre13g01796 278 Gene3D - 258 278 - -
Trre13g01796 278 FunFam Peroxidase 27 174 - -
Trre13g01796 278 Gene3D Peroxidase, domain 2 161 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01796 Trre-Chr13 15188361 15190450 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01796 20 278 Peroxidase AT5G05340 54.333 1.31e-106 310